error when use loadH5 in easySCFr

[kwhspike]

I converted h5ad file to h5 file by using easySCFpy

adata_LEC = sc.read_h5ad("LEC.h5ad")

from easySCFpy import saveH5
saveH5(adata_LEC, "LEC.h5")

when I use loadH5 fuction to read file I have saved from easySCFpy,it will pops up error

sce.sc<- loadH5('LEC.h5')
[1] "there is assay: RNA in the h5 file"
[1] "Reading raw data..."
<simpleError in h(simpleError(msg, call)): error in evaluating the argument 'x' in selecting a method for function 't': 'dims' must contain all (i,j) pairs>
Error in loadH5("LEC.h5") :
object 'sce' not found

But when I try to read LEC.h5 in python,there is no problem

from easySCFpy import loadH5
adata_LEC=loadH5( "LEC.h5")

adata_LEC
AnnData object with n_obs × n_vars = 1311 × 51779
obs: 'Sample', 'Dataset', 'Patient', 'Class', 'SubCluster', 'MMRstatus', 'Position', 'Site', 'Grade', 'GrandparentalCluster', 'ParentalCluster', 'nCount_RNA', 'nFeature_RNA'
var: 'name'
obsm: 'X_umap'

I dont know why and I cant cope with this issue......

[964612858j5]

I faced the same problem....

[dbyzy]

I also have the same problem

[Efdix]

I encountered the same problem and solved it. Here's the solution:

Solution:

1. First, reinstall the following two packages (force reinstallation):

install.packages("fastmap", force = TRUE)
install.packages("shiny", force = TRUE)

2. Then, completely close R/RStudio and restart it.