Thank you for providing HDL, such a powerful tool.
When I built the reference panel, I used 1_split_chroms.R to split chromosomes, with the --min and --max options controlling the average range of variant counts in the fragments. The final split resulted in each block containing roughly equal numbers of SNPs. I'd like to know if the software can currently divide the blocks according to LD.
It should be noted that I am using a pig genome, not a human genome.
Thanks.
Thank you for providing HDL, such a powerful tool.
When I built the reference panel, I used 1_split_chroms.R to split chromosomes, with the --min and --max options controlling the average range of variant counts in the fragments. The final split resulted in each block containing roughly equal numbers of SNPs. I'd like to know if the software can currently divide the blocks according to LD.
It should be noted that I am using a pig genome, not a human genome.
Thanks.