I am using current version and keep on getting the below error code. I am using 1KG as referene panel.
Estimating which build (hg18/hg19/hg37) of the reference panel and the GWAS file, in case it is necessary to modify the GWAS file to match the reference panel
some_records_from_each_chromosome.size():0
(ref) :count_of_hg18_0based,count_of_hg19_0based,count_of_hg20_0based,count_of_hg18_1based,count_of_hg19_1based,count_of_hg20_1based: 0 , 0 , 0 , 0 , 0 , 0
gwas_all_chrpos.size():0
(gwas):count_of_hg18_0based,count_of_hg19_0based,count_of_hg20_0based,count_of_hg18_1based,count_of_hg19_1based,count_of_hg20_1based: 0 , 0 , 0 , 0 , 0 , 0
which_build_gwas,which_build_ref: unknown , unknown
ssimp: src/ssimp.cc:877: int main(int, char**): Assertion `which_build_ref != ssimp:: which_build_t:: unknown' failed.
Aborted (core dumped)
I am bit confused by this error code. Are you able to give any advice?
Thank you,
Victoria
I am using current version and keep on getting the below error code. I am using 1KG as referene panel.
Estimating which build (hg18/hg19/hg37) of the reference panel and the GWAS file, in case it is necessary to modify the GWAS file to match the reference panel
some_records_from_each_chromosome.size():0
(ref) :count_of_hg18_0based,count_of_hg19_0based,count_of_hg20_0based,count_of_hg18_1based,count_of_hg19_1based,count_of_hg20_1based: 0 , 0 , 0 , 0 , 0 , 0
gwas_all_chrpos.size():0
(gwas):count_of_hg18_0based,count_of_hg19_0based,count_of_hg20_0based,count_of_hg18_1based,count_of_hg19_1based,count_of_hg20_1based: 0 , 0 , 0 , 0 , 0 , 0
which_build_gwas,which_build_ref: unknown , unknown
ssimp: src/ssimp.cc:877: int main(int, char**): Assertion `which_build_ref != ssimp:: which_build_t:: unknown' failed.
Aborted (core dumped)
I am bit confused by this error code. Are you able to give any advice?
Thank you,
Victoria