Update Singularity file definition to avoid keyserver errors #388
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
keys.gnupg.net has been deprecated now, so I changed it to the ubuntu keyserver keyserver.ubuntu.com. Also since I was having problems with eduroam, since it blocks most ports (gpg uses 11371 by default), I added explicity the protocol and port number 80.
lgrozinger
changed the title
Characters like | cause problems in file paths on some systems. This commit adds a few lines to replace "|", ";", and "#", which may cause problems, with "_". We found this solved errors with opening files with /bin/sh.
map in Python3 returns a map object, which does not have a length. Some of the code in _pytadbit/tools used len on the map object and has been updated so that it is compatible with Python3.x
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
keys.gnupg.net has been deprecated now, so I changed it to the ubuntu keyserver keyserver.ubuntu.com.
Also since I was having problems with eduroam, since it blocks most ports (gpg uses 11371 by default), I added explicity the protocol and port number 80. This still works for other networks too.
And for some reason (maybe an upstream change) we needed to fetch another key to get apt to verify the required packages.
This change is