Installing AMRrules

From source

The only dependency is Python, v3.12 or higher. We recommend you store the AMRrules package inside its own conda environment. After installation, users need to download the resources required for AMRrules to function, using the --download-resources command. This only needs to be done once after installation, or when updating the resources.

conda create -n amrrules_beta -c bioconda python=3.12

conda activate amrrules_beta

conda install pip

git clone https://github.com/AMRverse/AMRrules

cd AMRrules

make dev

amrrules --download-resources

from conda

TBD

from pip

TBD