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Assembly tagging#17

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daz10000 wants to merge 8 commits intoAmyris:masterfrom

demetrixbio:assembly_tagging

Commits on Jun 11, 2018

FEA: initial implementation of #tag support, doesn't pass serial tag accumulation test
Darren Platt
committed
FEA: support for TransientCumulative pragmas and multi line tagging
Darren Platt
committed

Commits on Jun 12, 2018

MIN: tidying up unused fucnction
Darren Platt
committed
FEA: added tag field to flat file output
Darren Platt
committed
FEA: flat file format emits tags as TA lines
Darren Platt
committed
DOC: basic markdown docs describing tagging feature
Darren Platt
committed
BUG: command line --tag arguments weren't getting folded in
Darren Platt
committed
Merge branch 'master' into assembly_tagging
Darren Platt
committed