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Update reference dictionary#14

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bnovak32 merged 2 commits intoAstrobioMike:mainfrom
bnovak32:add-celegans
Apr 17, 2026
Merged

Update reference dictionary#14
bnovak32 merged 2 commits intoAstrobioMike:mainfrom
bnovak32:add-celegans

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@bnovak32 bnovak32 commented Jan 13, 2026

Enable on-the-fly updates to reference files with no code changes

  • Add logic for reading reference dictionary from file, rather than hard-coding
  • update reference date logic to pull from file modification date if possible
  • update help text to include information about rRNA_refs environment variable

- move reference dictionary to json file
- add C. elegans
- update reference date
- allow more easily configurable references without need for code
  modification
    - enable reading reference dictionary from reference folder
    - update logic for reference date to pull date from reference
      file modification date
@bnovak32 bnovak32 merged commit d8790b2 into AstrobioMike:main Apr 17, 2026
@bnovak32 bnovak32 deleted the add-celegans branch April 17, 2026 00:41
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