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Dev - #289

Merged

mjwestgate merged 98 commits into

mainfrom

dev

Feb 11, 2026

Merged

Dev#289
mjwestgate merged 98 commits into
mainfrom
dev

Commits on Jun 20, 2025
- Update node_metadata.csv
  DimEvil
  authored
  611849d
- Update node_config.csv
  DimEvil
  authored
  de0bcc8
Commits on Jun 25, 2025
- Merge pull request #270 from DimEvil/patch-4
  mjwestgate
  authored
  14b3d0e
- Merge pull request #269 from DimEvil/patch-3
  mjwestgate
  authored
  0d75e14
Commits on Jun 26, 2025
- Attempt to fix broken test coverage on CI
  mjwestgate
  committed
  3d69120
Commits on Jul 4, 2025
- First pass at supporting Kew Data Portal APIs (#271)
  mjwestgate
  committed
  265cd37
Commits on Jul 7, 2025
- Support updated taxonomic queries for GBIF (#272)
  mjwestgate
  committed
  c6edf7c
Commits on Jul 8, 2025
- light restructure ahead of GBIF predicates revision
  mjwestgate
  committed
  dcf891f
Commits on Jul 10, 2025
- First pass at getting Flanders APIs running (#256)
  mjwestgate
  committed
  aef3a8d
Commits on Jul 15, 2025
- First pass at converting `dplyr::filter()` statements directly into predicates (#272)
  mjwestgate
  committed
  4417255
Commits on Jul 30, 2025
- First pass at adding `coalesce()` and `as_query()` #278
  mjwestgate
  committed
  8653cb4
- Start integrating predicates to GBIF workflows #272
  mjwestgate
  committed
  64b61a3
Commits on Aug 4, 2025
- rename `parse_` functions to `collapse_` for greater clarity and consistency (#278)
  mjwestgate
  committed
  739810b
- Fix bugs from recent refactoring (#278)
  mjwestgate
  committed
  aff474a
Commits on Aug 6, 2025
- Switch to predicates search for GBIF counts (#272)
  mjwestgate
  committed
  71c5603
Commits on Aug 7, 2025
- Support `group_by()` with `count()` for GBIF (#272)
  mjwestgate
  committed
  3613a45
Commits on Aug 12, 2025
- Support `group_by()` with `count()` for > 1 fields in GBIF queries (#272)
  mjwestgate
  committed
  8ca899f
- Clean up code as per R style guide
  mjwestgate
  committed
  024dc77
Commits on Aug 14, 2025
- More effectively document and link new constructors and object classes (#278)
  mjwestgate
  committed
  514ee31
Commits on Sep 3, 2025
- Fix bugs identified using `test()`
  mjwestgate
  committed
  10bad4e
Commits on Sep 5, 2025
- Clean up code as per R style guide, commit 2
  mjwestgate
  committed
  f8996c0
- Add basisOfRecord to "basic" group in `galah_select()`
  mjwestgate
  committed
  ece18ea
- Ensure loading message correctly describes selected atlas
  mjwestgate
  committed
  3fd5f58
Commits on Sep 12, 2025
- First pass implementing `select()` for lists #266
  mjwestgate
  committed
  393f7b7
- Update as_query-unnest() to support added fields #266
  mjwestgate
  committed
  f59ea40
- Ensure adding arguments like `thumbnail` are parsed in `as_query()` #278
  mjwestgate
  committed
  e31e906
- Swap to API for GBIF field descriptions #272
  mjwestgate
  committed
  a83356c
Commits on Sep 15, 2025
- New version of API availability plot
  mjwestgate
  committed
  8c14acd
- clean up code as per R style guide, commit 3
  mjwestgate
  committed
  e73e554
Commits on Sep 16, 2025
- Implement caching for all metadata types #282
  mjwestgate
  committed
  7a34395
Commits on Sep 26, 2025
- Move to testthat edition 3 - commit 1
  mjwestgate
  committed
  a261e84
- test extending `everything()` to other metadata functions (#266)
  mjwestgate
  committed
  2ca234c
Commits on Oct 7, 2025
- First pass at supporting `select()` for metadata functions
  mjwestgate
  committed
  f9fe109
Commits on Oct 16, 2025
- Ensure `select()` works for all metadata functions (#266)
  mjwestgate
  committed
  62a3bf6
Commits on Oct 20, 2025
- Extend `all_fields` argument to all metadata types (#266)
  mjwestgate
  committed
  6478a71
- Update printing
  mjwestgate
  committed
  5e995f5
- Update `atlas_media()` to support `all_fields()` (#266)
  mjwestgate
  committed
  d30e39d
Commits on Oct 22, 2025
- update onload to use `packageStartupMessage()` instead of `cli::cli_inform()`
  mjwestgate
  committed
  b07dbf7
Commits on Oct 24, 2025
- Miscellaneous bug fixes detected using `test()`
  mjwestgate
  committed
  6d0734b
Commits on Oct 28, 2025
- First pass at supporting authentication via JWT (#189)
  mjwestgate
  committed
  7d93f5e
Commits on Oct 29, 2025
- Add vignette on sensitive data (#189)
  mjwestgate
  committed
  faeb1cd
- Minor bug fixes for authentication (#189)
  mjwestgate
  committed
  3156838
Commits on Nov 4, 2025
- First pass at revised authentication architecture (#189)
  mjwestgate
  committed
  13271c6
- Fix bug with query handling preventing execution of API calls
  mjwestgate
  committed
  f080488
Commits on Nov 6, 2025
- Ensure authentication pipeline works for occurrences (#189)
  mjwestgate
  committed
  0618902
- Updates to messages
  mjwestgate
  committed
  eabc741
Commits on Nov 7, 2025
- Restructure /R directory to group `dplyr` extentions
  mjwestgate
  committed
  ec18152
Commits on Nov 9, 2025
- Fix minor bugs in lists and select functions, associated tests
  mjwestgate
  committed
  cbccf60
Commits on Nov 10, 2025
- Support supplying field names to `count.data_request()` (#284)
  mjwestgate
  committed
  8dc6c19
Commits on Dec 9, 2025
- initial commit for `summarize()` function
  mjwestgate
  committed
  4602c58
- Update NEWS.md with changes made so far for v2.2.0
  mjwestgate
  committed
  19c4f3b
Commits on Dec 12, 2025
- Simplify authentication to only use `galah_config()` (#189)
  mjwestgate
  committed
  7dc222e
- Reformat `arrange()` to natively support `dplyr::desc()` (#284)
  mjwestgate
  committed
  1742154
Commits on Dec 15, 2025
- caching recent changes ahead of laptop swap
  mjwestgate
  committed
  608bee6
Commits on Dec 19, 2025
- First pass supporting `distinct()` #284
  mjwestgate
  committed
  1a61f80
Commits on Jan 5, 2026
- change `update_request_object()` to add slots in the order provided (#284)
  mjwestgate
  committed
  1dbbe77
- Append `request` object to `query` to ensure all info available for later functions (#284)
  mjwestgate
  committed
  197be60
Commits on Jan 6, 2026
- More progress implementing `distinct()` (#284)
  mjwestgate
  committed
  5009b8f
Commits on Jan 7, 2026
- Misc bug fixes
  mjwestgate
  committed
  d656445
- remove deprecated functions and superfluous `lifecycle` badges
  mjwestgate
  committed
  585530a
Commits on Jan 8, 2026
- Start updating documentation for version 2.2.0
  mjwestgate
  committed
  419f52b
- make `galah_call()` synonymous with `request_data()`
  mjwestgate
  committed
  4eafab8
- Consolidate OOP vignette into Quick Start Guide
  mjwestgate
  committed
  3dd0c3b
Commits on Jan 9, 2026
- update tests
  mjwestgate
  committed
  efd7230
Commits on Jan 13, 2026
- Fix bugs in `distinct()` parsing
  mjwestgate
  committed
  8a722f1
- Fix bugs in authentication pipeline
  mjwestgate
  committed
  6fedf59
- swap `as_query()` for `capture()`, add new class `prequery()`
  mjwestgate
  committed
  eea7cce
- rename files and internal functions from `as_query_` prefix to `capture_`
  mjwestgate
  committed
  ac9a235
Commits on Jan 14, 2026
- Ensure DOI queries parsed correctly; minor bux fixes re: as_query()
  mjwestgate
  committed
  5005da0
Commits on Jan 28, 2026
- Fix link to package reference in README
  mjwestgate
  committed
  804672c
Commits on Feb 2, 2026
- Fix bugs in passing `mint_doi` between functions
  mjwestgate
  committed
  dc57368
- Fix bugs in `atlas_media()`
  mjwestgate
  committed
  6ef3a87
- update authorship statement
  mjwestgate
  committed
  2bf7997
Commits on Feb 3, 2026
- Clean up `distinct()` workflow (#275, #267)
  mjwestgate
  committed
  82e92bc
- Fix various bugs
  mjwestgate
  committed
  eb343e6
Commits on Feb 4, 2026
- Update GBIF predicates support in `filter()`
  mjwestgate
  committed
  7d77409
Commits on Feb 5, 2026
- Support `dplyr::glimpse()` for occurrence queries
  mjwestgate
  committed
  44a067c
Commits on Feb 6, 2026
- Fix bug where GBIF facet queries failing without a reason being given
  mjwestgate
  committed
  a604a1b
- rename `coalesce()` as `compound()` to avoid confusion and conflicts with `dplyr`
  mjwestgate
  committed
  e4f9f66
- Fix `show_values()` for lists
  daxkellie
  committed
  88df77a
- First set of changes identified by `check()`
  mjwestgate
  committed
  911c3f8
- Merge pull request #287 from AtlasOfLivingAustralia/dev-mw-6Feb2026
  mjwestgate
  authored
  4fb2ec6
- edit vignette to reflect gbif doi changes
  daxkellie
  committed
  3c445bc
- minor improvements to cli messages
  daxkellie
  committed
  2236b10
- some edits to docs
  daxkellie
  committed
  bfb4827
- More bug fixes (inc for those from previous commit)
  mjwestgate
  committed
  997d550
Commits on Feb 9, 2026
- make `galah_call()` workflow clearer in docs
  daxkellie
  committed
  60adb6c
- Edit NEWS prior to release
  daxkellie
  committed
  99f3bdc
- Fix errors shown by GBIF tests
  mjwestgate
  committed
  fbc48c1
- Fix bugs identified in `check()`
  mjwestgate
  committed
  06d8be4
- Merge pull request #288 from AtlasOfLivingAustralia/dk-edits
  mjwestgate
  authored
  7199498
- Minor updates to help files and QSG
  mjwestgate
  committed
  355104a
Commits on Feb 10, 2026
Commits on Feb 11, 2026
- Support `glimpse()` for GBIF
  mjwestgate
  committed
  b30df28
- Update `print()` tests, add examples for `glimpse()`, `authenticate()`
  mjwestgate
  committed
  f3e5735
- update vignettes, news, pkgdown site
  mjwestgate
  committed
  97e2a45

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