Skip to content

fix(prior-sampler): acceptance targets, honest family reporting, dead knobs - #205

Merged
MaartenMarsman merged 1 commit into
developfrom
audit/33-sampler-knobs
Oct 19, 2026
Merged

MaartenMarsman merged 1 commit into
developfrom
audit/33-sampler-knobs

Conversation

@MaartenMarsman

@MaartenMarsman MaartenMarsman commented Aug 12, 2026 •

Copy link
Copy Markdown
Collaborator

Brief 33 of the August 2026 audit. Report: dev/review-2026-08/reports/33-sampler-knobs.md

Constituent changes:

  • fix(prior-sampler): deprecate the unused step_size argument of sample_ggm_prior()
  • fix(prior-sampler): forward bgm()'s acceptance target to the joint prior chain
  • fix(prior-sampler): report the graph-prior family sample_graph_prior() ran
  • chore(dead-code): drop the unused gradient parameters in the HMC utilities

Part of the 12-PR stack replacing #200 (one PR per audit brief). Squash-merge in stack order starting from PR 29, then run dev/review-2026-08/restack.sh to rebase the remaining PRs. The combined tip of the stack is bit-identical to the tree that passed the stage gates: full suite 0 fail / 9276 pass, R CMD check --as-cran 0 errors, 0 warnings, 3 benign NOTEs.

@MaartenMarsman
MaartenMarsman force-pushed the audit/32-simulate-predict branch from afb7594 to 5dfa57c Compare October 16, 2026 17:12
Base automatically changed from audit/32-simulate-predict to develop October 19, 2026 14:12
@MaartenMarsman
MaartenMarsman force-pushed the audit/33-sampler-knobs branch 3 times, most recently from 4b4b1eb to 22502c5 Compare October 19, 2026 14:36
… knobs

Brief 33 of the August 2026 audit. Report: dev/review-2026-08/reports/33-sampler-knobs.md

Constituent changes:
- fix(prior-sampler): deprecate the unused step_size argument of sample_ggm_prior()
- fix(prior-sampler): forward bgm()'s acceptance target to the joint prior chain
- fix(prior-sampler): report the graph-prior family sample_graph_prior() ran
- chore(dead-code): drop the unused gradient parameters in the HMC utilities
@codecov

codecov Bot commented Oct 19, 2026

Copy link
Copy Markdown

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 92.84%. Comparing base (535497d) to head (f6e670a).

Additional details and impacted files
@@             Coverage Diff             @@
##           develop     #205      +/-   ##
===========================================
+ Coverage    92.79%   92.84%   +0.04%     
===========================================
  Files          115      115              
  Lines        18827    18822       -5     
===========================================
+ Hits         17471    17475       +4     
+ Misses        1356     1347       -9     

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@MaartenMarsman
MaartenMarsman merged commit bfbb564 into develop Oct 19, 2026
10 checks passed
@MaartenMarsman
MaartenMarsman deleted the audit/33-sampler-knobs branch October 19, 2026 16:44
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant