README updates - #8
Merged
Merged
Conversation
Example fails: ``` > edgelist <- infer_edgelist( data = traits, cat_combo_list = feeding_rules, col_taxon = "species", certainty_req = "all", allow_self = FALSE ) [1] "feeding" [1] "motility" [1] "habitat" [1] "size" Error in infer_edgelist(data = traits, cat_combo_list = feeding_rules, : object 'fw_match_traits3' not found ``` Remove `allow_self = FALSE` options, to match example in the workflow vignette, which does not fail. Addresses #2
Example fails: ``` Error in library(pfwim.R) : there is no package called ‘pfwim.R’ ``` Remove `.R` from library name. Addresses #3
This was
linked to
issues
Mar 30, 2026
TanyaS08
self-requested a review
March 30, 2026 11:03
TanyaS08
approved these changes
Mar 30, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Update README file.
Adjust package name in
library()example, remove.Rextension.Adjust
infer_edgelist()example, removingallow_self = FALSEoption, which causes error.The example matches that in th workflow vignette, but a more complete fix may require code adjustments.
This pull request addresses issues #2 and #3.