Theoretical physicist/biologist. Interested in evolutionary theory & inference, genotype-phenotype maps, virus evolution, and chromatin polymer physics.
Popular repositories Loading
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Stochastic-Epidemic-Extinction
Stochastic-Epidemic-Extinction PublicCode to plot extinction time predictions and distributions, as well as for performing Gillespie simulations of SIR model and spatial birth death model
MATLAB
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MutliplexDriveResistanceSims
MutliplexDriveResistanceSims PublicWright-Fisher combined with Beverton-Holt stochastic simulations of the evolution of multiplex drive resistance. Multinomial sampling has option of fast and accurate hybrid Poisson-Gaussian approxi…
MATLAB
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MultiplexSuppressionDriveResistanceSims
MultiplexSuppressionDriveResistanceSims PublicStochastic simulations of multiplex suppression drives with multiple types of resistance alleles (R1, R2, R3)
MATLAB
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