Since the return for MILC(), CAI(), etc is a matrix with just values and not gene names, one cannot re-associate those values with the gene names when filtering="hard" is used, given that the returned matrix is a different length from the input gene sequences.
It would be helpful if MILC() and associated functions all return matrices (or dataframes) with sequence names for the rownames.
Since the return for
MILC(),CAI(), etc is a matrix with just values and not gene names, one cannot re-associate those values with the gene names whenfiltering="hard"is used, given that the returned matrix is a different length from the input gene sequences.It would be helpful if
MILC()and associated functions all return matrices (or dataframes) with sequence names for the rownames.