Resume - #107

Merged

ahanden merged 21 commits into

BioinfoUNIBA:mainfrom

Jul 6, 2026

Commits on Jun 15, 2026

Added parent temp dir to store all files. Made json file of cli arguments. Broken.
ahanden
committed
9f1ae68

Commits on Jun 18, 2026

Fixed arg order
ahanden
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a585ae3
Resume system functional
ahanden
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d79e071
mypy
ahanden
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d7d54a7
ruff
ahanden
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7731b46

Commits on Jun 26, 2026

Linting and mymy
ahanden
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b5a5ef9
Updated docstrings. Adjusted test code for new import paths
ahanden
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abf341a
Added cleanup code for *.done files
ahanden
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323cf5f

Commits on Jul 3, 2026

merged with main
ahanden
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3940eeb
Some linting and reorganizing
ahanden
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5f61e50
Merge branch 'main' into resume
ahanden
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fa7824e
moved main analyze function to redi_thread
ahanden
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edb1255
Changed temp file list from json to csv
ahanden
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31bd690
Made temp_file_manager into a context manager
ahanden
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bbab3dd

Commits on Jul 4, 2026

Refactored main method for analyze
ahanden
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f9078d2
Added documentation to temp_file_manager
ahanden
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d3c279f
Documentation for analyze main. isort
ahanden
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5d9314f
refactored redi_pool from redi_thread
ahanden
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70ef898
Fixed test cases for splicing files
ahanden
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a091097
linting
ahanden
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8dba1c5
Delete reditools/__init__.pyc
ahanden
authored
c2296fc