SNP_calling

Bash scripts to genomic data analysis on slurm cluster and Rstudio scripts for simple view results

Name		Name	Last commit message	Last commit date
.gitignore		.gitignore
02-analysis_of_filtering_results.R		02-analysis_of_filtering_results.R
03-analysis_of_mapping_results.R		03-analysis_of_mapping_results.R
04-analysis_of_variants_calling.R		04-analysis_of_variants_calling.R
05.1-analysis_of_pre-filtering_variants.R		05.1-analysis_of_pre-filtering_variants.R
05.2-statistics_on_missing_SNP.R		05.2-statistics_on_missing_SNP.R
05.3-LD_computing_results.R		05.3-LD_computing_results.R
06.1-population_structure.R		06.1-population_structure.R
06.2-basic_stats_on_pop.R		06.2-basic_stats_on_pop.R
07.1-Bayescan_analysis.R		07.1-Bayescan_analysis.R
07.2-SweeD_analysis.R		07.2-SweeD_analysis.R
08.1-Baypass_analysis.R		08.1-Baypass_analysis.R
08.2-ACP_variables_env_Guyane.R		08.2-ACP_variables_env_Guyane.R
08.3-LFMM2.R		08.3-LFMM2.R
08.4-RDA.R		08.4-RDA.R
README.md		README.md
SNP_calling.Rproj		SNP_calling.Rproj

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