This repository contains work for "A frameshift mutation in the methyltransferase rlmN is associated with linezolid resistance in Mycobacterium tuberculosis".
Contains all scripts needed to download the initial ATB bacterial assemblies used for the manuscript
Contains all scripts + data needed to re-run the BLAST search across all of the ATB bacterial assemblies
Contains all downstream processing, including calculations to create Table 2.
Contains all processing for the phylogenetic work, including homology of rlmN and production of Fig 1 (before some Illustrator color editing).
Contains all reference genomes used to complete the annotation search for rlmN