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@CERMO-FC-bioinformatics-platform

CERMO-FC-bioinformatics platform

CERMO-FC-bioinformatics platform supports the main analyzes of data from high throughput sequencing.

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  1. PhIP-Seq PhIP-Seq Public

    R scripts for analyzing PhIP-Seq data using the edgeR package. Includes normalization, dispersion estimation, MDS plotting, and differential enrichment analysis.

    R

  2. resistome-microbiome-analysis resistome-microbiome-analysis Public

    This repository contains code and pipelines used to analyze resistome and microbiome data generated from shotgun metagenomic sequencing.

    Shell

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