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Update ENSEMBL containerized VEP interface code to handle much longer consequences

Status: Open.

#52 In CapraLab/pdbmap;

· ChrisMoth opened on Mar 30, 2025

Improve shrouding of sensitive data during log creation

Status: Open.

#51 In CapraLab/pdbmap;

· ChrisMoth opened on Mar 30, 2025

Add MANE cross-references

Status: Open.

#48 In CapraLab/pdbmap;

· ChrisMoth opened on Mar 13, 2024

Cross reference uniprot IDs to ALL Sifts-aligned PDBs, not just PDB IDs from idmapping

Status: Open.

#46 In CapraLab/pdbmap;

· ChrisMoth opened on Feb 13, 2023

Replace sys.exit() across all modules

Status: Open.

#44 In CapraLab/pdbmap;

· ChrisMoth opened on Oct 3, 2022

With PFAM server going away, create domain graphics locally

Status: Open.

#42 In CapraLab/pdbmap;

· ChrisMoth opened on Sep 14, 2022

Integrate new Gnomad Mitochondrial data

Status: Open.

#39 In CapraLab/pdbmap;

· ChrisMoth opened on Jul 15, 2022

Gnomad Variants: Identify and reject transcripts which don't map to Chrom1-22/X/Y/MT

Status: Open.

#32 In CapraLab/pdbmap;

· ChrisMoth opened on Nov 22, 2021

Style Code to match PEP 8

Status: Open.

#31 In CapraLab/pdbmap;

· ChrisMoth opened on Nov 22, 2021

Document pdbmap.py --load_vcf; comment .slurm scripts

Status: Open.

#25 In CapraLab/pdbmap;

· ChrisMoth opened on Jul 14, 2021

Add access to gene ID numbers from uniprot idmapping

Status: Open.

#22 In CapraLab/pdbmap;

· ChrisMoth opened on Mar 5, 2021

Create biounits from mmCIF files, in biopython.

Status: Open.

#16 In CapraLab/pdbmap;

· ChrisMoth opened on May 12, 2020