Linux or Windows (via WSL)
- WSL
wsl --install -d Ubuntu-20.04
- Conda installation
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh
source ~/.bashrc
- Python environment
conda create -n mhctools python=3.10
conda activate mhctools
cd /home/to/project_folder
pip install -r requirements.txt
- MHCflurry environment
mhcflurry-downloads fetch models_class1_presentation
- NetMHCpan environment
sudo apt update
sudo apt install tcsh
python ./run_toolname.py