Skip to content

ChrisMao0325/sc_stats_model

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

359 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

memento

memento is a Python package for estimating the mean, variability, and gene correlation from scRNA-seq data as well as contructing a framework for hypothesis testing of differences in these parameters between groups of cells. Method-of-moments estimators are used for parameter estimation, and efficient resampling is used to construct confidence intervals and establish statistical significance.

Installation

To install memento, pull the package from PyPI:

pip install memento-de

Memento only has one dependency, which is scanpy. Any version of python > 3.9 should work.

For more information, please refer to the documentation here!

NOTE:

This package is under fairly active development. Please run pip install --upgrade memento-de to upgrade to the latest version, which is currently 0.1.2!

About

Direct estimation of mean and covariance from single cell RNA seq experiments

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

 
 
 

Contributors

Languages

  • Jupyter Notebook 99.6%
  • Other 0.4%