Update to ClimaAtmos v0.39.0

[nefrathenrici]

Content

• Update compats for ClimaAtmos to 0.39
• Update configs:
  • vert_diff: true -> VerticalDiffusion
  • rad: nothing -> ~
• Update manifests:

    Updating `~/clima/ClimaCoupler.jl/experiments/AMIP/Project.toml`
  [29b5916a] ↑ ClimaAnalysis v0.5.21 ⇒ v0.5.22
  [b2c96348] ↑ ClimaAtmos v0.38.4 ⇒ v0.39.0
  [61eb1bfa] ↑ GPUCompiler v1.10.0 ⇒ v1.11.1
    Updating `~/clima/ClimaCoupler.jl/experiments/AMIP/Manifest.toml`
  [79e6a3ab] ↑ Adapt v4.5.2 ⇒ v4.6.0
  [4fba245c] ↑ ArrayInterface v7.24.0 ⇒ v7.25.0
  [179af706] ↑ CFTime v0.2.8 ⇒ v0.2.9
  [29b5916a] ↑ ClimaAnalysis v0.5.21 ⇒ v0.5.22
  [b2c96348] ↑ ClimaAtmos v0.38.4 ⇒ v0.39.0
  [a0c0ee7d] ↑ DifferentiationInterface v0.7.17 ⇒ v0.7.18
  [442a2c76] ↑ FastGaussQuadrature v1.1.0 ⇒ v1.2.0
  [61eb1bfa] ↑ GPUCompiler v1.10.0 ⇒ v1.11.1
  [692b3bcd] ↑ JLLWrappers v1.7.1 ⇒ v1.8.0
  [682c06a0] ↑ JSON v1.5.2 ⇒ v1.6.0
  [929cbde3] ↑ LLVM v9.7.1 ⇒ v9.8.1
  [c0aeaf25] ↑ SciMLOperators v1.18.0 ⇒ v1.21.0
  [4ee394cb] ↑ CUDA_Driver_jll v13.2.1+0 ⇒ v13.2.1+2
  [dad2f222] ↑ LLVMExtra_jll v0.0.42+0 ⇒ v0.0.43+1
  [1317d2d5] ↑ oneTBB_jll v2022.0.0+1 ⇒ v2022.3.0+0
  [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0
  [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.12.2
  [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.23+5
  [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.6.1+0