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Merged
juliasloan25 merged 1 commit into from
May 15, 2026
Merged

remove SciMLBase dep #1928

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4 changes: 1 addition & 3 deletions Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,6 @@ Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
NCDatasets = "85f8d34a-cbdd-5861-8df4-14fed0d494ab"
NVTX = "5da4648a-3479-48b8-97b9-01cb529c0a1f"
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
SurfaceFluxes = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f"
Expand Down Expand Up @@ -62,7 +61,7 @@ ClimaLand = "1.8"
ClimaOcean = "0.9.5"
ClimaParams = "1.0"
ClimaSeaIce = "0.4"
ClimaTimeSteppers = "0.7, 0.8, 0.9"
ClimaTimeSteppers = "0.8.11, 0.9"
ClimaUtilities = "0.1.22"
Dates = "1"
GeoMakie = "0.7"
Expand All @@ -79,7 +78,6 @@ Oceananigans = "0.107"
Poppler_jll = "24"
Printf = "1"
Random = "1"
SciMLBase = "~2.110, ~2.111, ~2.112"
StaticArrays = "1.9.8"
Statistics = "1"
SurfaceFluxes = "0.15.0, 1"
Expand Down
2 changes: 1 addition & 1 deletion docs/src/interfacer.md
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Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ function varies across component models.
- `step!(::AbstractComponentSimulation, t)`: A function to update the
simulation in-place with values calculate for time `t`. For the
models we currently have implemented, this is a simple wrapper around
the `step!` function implemented in SciMLBase.jl.
the `step!` function implemented in ClimaTimeSteppers.jl.

### AbstractComponentSimulation - optional functions
- `Checkpointer.get_model_prog_state(::AbstractComponentSimulation)`:
Expand Down
164 changes: 13 additions & 151 deletions experiments/AMIP/Manifest-v1.11.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

julia_version = "1.11.9"
manifest_format = "2.0"
project_hash = "a11afd3d4e44404bb9c9da311912244791114883"
project_hash = "ba433f70522e20f16a6ac0ab2a21fa8a20341885"

[[deps.ADTypes]]
git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd"
Expand Down Expand Up @@ -352,9 +352,9 @@ version = "0.4.3+0"

[[deps.CUDA_Driver_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "TOML"]
git-tree-sha1 = "69bb8fdf66c687e35149ac9b2bd1d582fd58a792"
git-tree-sha1 = "23c51e2c9bb36be09c3f10f92d0b9cc294e1bc5e"
uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc"
version = "13.2.1+2"
version = "13.2.1+3"

[[deps.CUDA_Runtime_Discovery]]
deps = ["Libdl"]
Expand Down Expand Up @@ -475,7 +475,7 @@ uuid = "908f55d8-4145-4867-9c14-5dad1a479e4d"
version = "0.4.7"

[[deps.ClimaCoupler]]
deps = ["ArgParse", "ClimaAnalysis", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "Dates", "Insolation", "Interpolations", "JLD2", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "YAML"]
deps = ["ArgParse", "ClimaAnalysis", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "Dates", "Insolation", "Interpolations", "JLD2", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Random", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "YAML"]
path = "../.."
uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7"
version = "0.1.2"
Expand Down Expand Up @@ -664,22 +664,12 @@ git-tree-sha1 = "bf07704e843daabd2cb2bb1404571656f80bce16"
uuid = "1fbeeb36-5f17-413c-809b-666fb144f157"
version = "0.4.3"

[[deps.CommonSolve]]
git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470"
uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2"
version = "0.2.6"

[[deps.CommonSubexpressions]]
deps = ["MacroTools"]
git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5"
uuid = "bbf7d656-a473-5ed7-a52c-81e309532950"
version = "0.3.1"

[[deps.CommonWorldInvalidations]]
git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0"
uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8"
version = "1.0.0"

[[deps.Compat]]
deps = ["TOML", "UUIDs"]
git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad"
Expand Down Expand Up @@ -966,11 +956,6 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
version = "0.1.10"

[[deps.ExproniconLite]]
git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2"
uuid = "55351af7-c7e9-48d6-89ff-24e801d99491"
version = "0.10.14"

[[deps.Extents]]
git-tree-sha1 = "b309b36a9e02fe7be71270dd8c0fd873625332b4"
uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910"
Expand Down Expand Up @@ -1180,17 +1165,6 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7"
uuid = "559328eb-81f9-559d-9380-de523a88c83c"
version = "1.0.17+0"

[[deps.FunctionWrappers]]
git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e"
uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e"
version = "1.1.3"

[[deps.FunctionWrappersWrappers]]
deps = ["FunctionWrappers"]
git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8"
uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf"
version = "0.1.3"

[[deps.Functors]]
deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"]
git-tree-sha1 = "60a0339f28a233601cb74468032b5c302d5067de"
Expand All @@ -1204,9 +1178,9 @@ version = "1.11.0"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "ScopedValues", "Serialization", "SparseArrays", "Statistics"]
git-tree-sha1 = "34fd745547978beb471f029f447290ef4dbc7bbd"
git-tree-sha1 = "cf230532c7871ce9bfa5812dd699cb68da888364"
uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
version = "11.5.3"
version = "11.5.4"
weakdeps = ["JLD2"]

[deps.GPUArrays.extensions]
Expand Down Expand Up @@ -1410,11 +1384,6 @@ git-tree-sha1 = "57e9ce6cf68d0abf5cb6b3b4abf9bedf05c939c0"
uuid = "7869d1d1-7146-5819-86e3-90919afe41df"
version = "0.4.15"

[[deps.IfElse]]
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
version = "0.1.1"

[[deps.ImageAxes]]
deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"]
git-tree-sha1 = "e12629406c6c4442539436581041d372d69c55ba"
Expand Down Expand Up @@ -1611,12 +1580,6 @@ version = "1.14.3"
[deps.JSON3.weakdeps]
ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd"

[[deps.Jieko]]
deps = ["ExproniconLite"]
git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c"
uuid = "ae98c720-c025-4a4a-838c-29b094483192"
version = "0.2.1"

[[deps.JpegTurbo]]
deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"]
git-tree-sha1 = "9496de8fb52c224a2e3f9ff403947674517317d9"
Expand Down Expand Up @@ -2092,12 +2055,6 @@ git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe"
uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389"
version = "0.3.4"

[[deps.Moshi]]
deps = ["ExproniconLite", "Jieko"]
git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a"
uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d"
version = "0.3.7"

[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2023.12.12"
Expand All @@ -2118,9 +2075,9 @@ weakdeps = ["Adapt", "CUDA"]

[[deps.MutableArithmetics]]
deps = ["LinearAlgebra", "SparseArrays", "Test"]
git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0"
git-tree-sha1 = "dc5b2c4c111c46bc79ac4405eeb563523b39c004"
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
version = "1.7.1"
version = "1.8.0"

[[deps.NCDatasets]]
deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"]
Expand Down Expand Up @@ -2187,10 +2144,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.1.3"

[[deps.NaNStatistics]]
deps = ["PrecompileTools", "Static", "StaticArrayInterface"]
git-tree-sha1 = "d40d2359680061c5c61d5e324805ebf2ef0d8816"
deps = ["PrecompileTools"]
git-tree-sha1 = "a9ec1b5e6a3285f0f92d0a9ce825f115a6265cf2"
uuid = "b946abbf-3ea7-4610-9019-9858bfdeaf2d"
version = "0.6.56"
version = "0.6.57"

[deps.NaNStatistics.extensions]
NaNStatisticsDimensionalDataExt = "DimensionalData"
Expand Down Expand Up @@ -2457,22 +2414,6 @@ git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20"
uuid = "85a6dd25-e78a-55b7-8502-1745935b8125"
version = "0.2.4"

[[deps.PreallocationTools]]
deps = ["Adapt", "ArrayInterface", "PrecompileTools"]
git-tree-sha1 = "c05b4c6325262152483a1ecb6c69846d2e01727b"
uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46"
version = "0.4.34"

[deps.PreallocationTools.extensions]
PreallocationToolsForwardDiffExt = "ForwardDiff"
PreallocationToolsReverseDiffExt = "ReverseDiff"
PreallocationToolsSparseConnectivityTracerExt = "SparseConnectivityTracer"

[deps.PreallocationTools.weakdeps]
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5"

[[deps.PrecompileTools]]
deps = ["Preferences"]
git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f"
Expand Down Expand Up @@ -2742,73 +2683,11 @@ git-tree-sha1 = "81ec49d645af090901120a1542e67ecbbe044db3"
uuid = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
version = "0.1.0"

[[deps.SciMLBase]]
deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
git-tree-sha1 = "a06d451a6d0fa6e6da34d047d61af8beb187b0f1"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.112.0"

[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
SciMLBaseDistributionsExt = "Distributions"
SciMLBaseForwardDiffExt = "ForwardDiff"
SciMLBaseMLStyleExt = "MLStyle"
SciMLBaseMakieExt = "Makie"
SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements"
SciMLBaseMooncakeExt = "Mooncake"
SciMLBasePartialFunctionsExt = "PartialFunctions"
SciMLBasePyCallExt = "PyCall"
SciMLBasePythonCallExt = "PythonCall"
SciMLBaseRCallExt = "RCall"
SciMLBaseReverseDiffExt = "ReverseDiff"
SciMLBaseTrackerExt = "Tracker"
SciMLBaseZygoteExt = ["Zygote", "ChainRulesCore"]

[deps.SciMLBase.weakdeps]
ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2"
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078"
Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7"
MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca"
Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6"
PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b"
PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

[[deps.SciMLOperators]]
deps = ["Accessors", "Adapt", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "SafeTestsets"]
git-tree-sha1 = "50e6ec6879eab12b039924d5a10b91c95bf9bf7f"
uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
version = "1.21.0"

[deps.SciMLOperators.extensions]
SciMLOperatorsLoopVectorizationExt = "LoopVectorization"
SciMLOperatorsSparseArraysExt = "SparseArrays"
SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore"

[deps.SciMLOperators.weakdeps]
LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890"
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"

[[deps.SciMLPublic]]
git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b"
uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b"
version = "1.0.1"

[[deps.SciMLStructures]]
deps = ["ArrayInterface", "PrecompileTools"]
git-tree-sha1 = "607f6867d0b0553e98fc7f725c9f9f13b4d01a32"
uuid = "53ae85a6-f571-4167-b2af-e1d143709226"
version = "1.10.0"

[[deps.ScopedValues]]
deps = ["HashArrayMappedTries", "Logging"]
git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be"
Expand Down Expand Up @@ -2950,23 +2829,6 @@ git-tree-sha1 = "be1cf4eb0ac528d96f5115b4ed80c26a8d8ae621"
uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15"
version = "0.1.2"

[[deps.Static]]
deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"]
git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb"
uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
version = "1.4.0"

[[deps.StaticArrayInterface]]
deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"]
git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078"
uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718"
version = "1.10.0"
weakdeps = ["OffsetArrays", "StaticArrays"]

[deps.StaticArrayInterface.extensions]
StaticArrayInterfaceOffsetArraysExt = "OffsetArrays"
StaticArrayInterfaceStaticArraysExt = "StaticArrays"

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db"
Expand Down Expand Up @@ -3050,9 +2912,9 @@ version = "1.11.0"

[[deps.StructUtils]]
deps = ["Dates", "UUIDs"]
git-tree-sha1 = "dd974aefe288ef2898733aecf40858dc86742d74"
git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8"
uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42"
version = "2.8.1"
version = "2.8.2"

[deps.StructUtils.extensions]
StructUtilsMeasurementsExt = ["Measurements"]
Expand Down
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