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Pull requests: Clinical-Genomics/oncorefiner

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Pull requests list

feat: Add cnv report generation
#147 opened Jun 23, 2026 by fevac Collaborator • Draft
5 of 7 tasks
1
feat: Implement GENMOD in PROCESS_SV
#146 opened Jun 22, 2026 by kristinebilgrav Contributor • Draft
2
feat: Add genmod sv parameters and rename the snv genmod parameter
#144 opened Jun 22, 2026 by kristinebilgrav Contributor • Draft
2
feat: Add linx subwf
#143 opened Jun 22, 2026 by kristinebilgrav Contributor • Draft
@kristinebilgrav
2
feat: Add linx combine and vcf annotation local modules
#140 opened Jun 18, 2026 by kristinebilgrav Contributor Loading…
@kristinebilgrav
51
feat: CNV report using nf-core rmarkdownotebook module
#126 opened Jun 9, 2026 by fevac Collaborator Loading…
18
feat: add process cobalt for gens module
#122 opened Jun 3, 2026 by mathiasbio Contributor • Draft
3
feat: add process amber baf for gens module
#120 opened Jun 2, 2026 by mathiasbio Contributor • Draft
2
feat: add gens files
#119 opened Jun 2, 2026 by mathiasbio Contributor • Draft
2
feat: Annotate sv linx
#115 opened May 29, 2026 by kristinebilgrav Contributor • Draft
2
feat: add sv annotation scripts
#114 opened May 29, 2026 by kristinebilgrav Contributor Loading…
131
feat: add cobalt and amber params and test file paths for GENS workflow
#112 opened May 28, 2026 by mathiasbio Contributor • Draft
2
Subworkflow specific configs
#105 opened May 20, 2026 by kristinebilgrav Contributor • Draft
5
fix: Update publishing strategy for PROCESS_SVS
#93 opened May 7, 2026 by beatrizsavinhas Contributor • Draft
2
fix: vep args keep unannotated
#84 opened Apr 27, 2026 by mathiasbio Contributor • Draft
1
2
feat: made all steps optional
#47 opened Mar 11, 2026 by fevac Collaborator • Draft
3
ProTip! Updated in the last three days: updated:>2026-06-24.