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If you want to have a look at the network traffic inside the Docker containers, you can start Wireshark from your host system inside the network namespace of one of the containers. For example, you can start Wireshark inside the network namespace of the channel container, where FlowEmu is running, by using the following command:
sudo ip netns exec channel wireshark
You should then be able to select between the interfaces in and out, which are connected to the source and sink containers, respectively.