This is the code for the paper PPP2R1A mutations portend improved survival after cancer immunotherapy.
The scripts cover codes used for clinical and translational data analysis. We also provided the input data for each analysis in the corresponding figure folders. The analysis was run in R (v4.3.1), with the following required packages: dplyr (v1.1.4) tidyverse (v2.0.0) ggplot2 (v3.5.1) swimplot (v1.2.0) survival (v3.5-5) survminer (v0.4.9) ggrepel (v0.9.5) DESeq2 (v1.42.1) org.Hs.eg.db (v3.18.0) msigdbr (v7.5.1) clusterProfiler (v4.10.1)