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Ensure that there aren't deleted rows that inflate the database unnecessarily. Make a backup copy before the next step.
Remove any extraneous elements
Are there saved MapUnitPolysNNN feature classes? Feature classes or tables prepended with xxx or edit_? These are probably tables and feature classes your users don't need. Delete them.
The GeMS schema prescribes the creation of two sets of shapefiles. The SIMPLE set is a denormalized--and commonly incomplete--version of the database designed to be accessible to those with limited GIS resources. The OPEN set is a complete dump of the database into readily-accessible shapefiles and associated open-format tabular data. Use Translate to Shapefiles to create these.
Zip up .pdf, geodatabase, shapefiles .mxd, .style files, base data, etc. for distribution as described below (from pages 14-15 of GeMS specification document):