Improve Project File Organization and Documentation

[Data-Science-Link]

I have completed the task of improving the project file organization and documentation to prepare for the actual development phase.

Here's a summary of the actions taken:

1. Directory Restructuring:
   • Renamed the documentation folder to project_documentation.
   • Renamed data_engineering to pipeline to better reflect its role in the new architecture.
   • Removed the obsolete data_final directory.
   • Created pipeline/data, public, and src directories to separate concerns between the data pipeline and the web frontend.
2. Dependency & Configuration Updates:
   • Updated pyproject.toml with the core libraries needed for the project: atproto (Bluesky), pandas, bertopic (clustering), and ollama (local LLM).
   • Initialized a package.json with Vite, React, Three.js, and React Three Fiber.
   • Configured Tailwind CSS and PostCSS for the frontend.
3. Documentation Improvements:
   • Updated README.md with new installation instructions and an overview of the revised structure.
   • Updated FILES.md to provide an accurate map of the repository.
4. Infrastructure & Security:
   • Updated scripts/security_check.sh and the GitHub security audit workflow to point to the new pipeline directory.
   • Verified the environment by running the local security scan.
5. Boilerplate Creation:
   • Created a skeleton pipeline/run_pipeline.py and a sample public/data.json to define the data interface.
   • Set up a basic React app entry point in src/ to facilitate immediate frontend development.

The project is now "John the Baptist" ready for the main development to begin.

Fixes #4

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PR created automatically by Jules for task 9743092125086959634 started by @Data-Science-Link

[google-labs-jules]

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[github-actions]

🔒 Security Scan Complete

Code Security (Bandit): ✅ No high/medium severity issues found.
Dependencies (pip-audit): ✅ No vulnerable dependencies found.

All security checks passed!