neurolit v0.6.1

What's Changed

This release sets up tighter integration with FastSurfer and FreeSurfer output structures. This is relevant when using lit as pre-processing step for these toolboxes.

• Docker build robustness by @ClePol in #15
• Release/neurolit 0.6.1 fastsurfer by @ClePol in #16

Full Changelog: v0.6.0...v0.6.1

neurolit v0.6.0

What's Changed

• Make LIT pip-installable by @hensing1 in #2
• Calculating corrected statistics with FastSurfer by @ClePol in #9
• Documentation build by @ClePol in #10
• CPU support by @ClePol in #13
• Keep original geometry by @ClePol in #14

New Contributors

• @hensing1 made their first contribution in #2

Full Changelog: v0.5.0...v0.6.0

LIT beta

V0.5.0 Beta Release

What's New

• Initial public beta release of the Lesion Inpainting Tool (LIT)
• Robust lesion inpainting for T1w MRI scans using diffusion models
• Support for arbitrary lesion shapes and sizes
• Integration with FastSurfer pipeline
• Docker and Singularity containerization

Key Features

• Standalone lesion inpainting functionality
• Optional dilation of lesion masks for better coverage
• Preservation of non-lesion areas in output
• Post-processing tools for masking FastSurfer segmentations and surfaces
• Easy-to-use command line interface

Installation & Usage

See the README.md for detailed installation and usage instructions.

Known Limitations

• FastSurfer integration is still in development - requires manual running of FastSurfer after inpainting

Feedback

Please report any issues or suggestions on our GitHub repository.