Fix count_alliance_records() documentation - add default values and improve parameter descriptions

[Copilot]

This PR corrects the documentation for the count_alliance_records() function by addressing two key issues:

Changes Made

1. Added default values to all parameter documentation: All parameters now clearly show their default values in parentheses:

   • term_subset (default: NULL)
   • by_type (default: TRUE)
   • pivot (default: TRUE)
   • record_lvl (default: "disease-object")
   • assign_to (default: "species")

2. Improved record_lvl parameter description: Changed from the incomplete description "a string indicating the desired specificity of records." to "a string indicating the desired specificity of records; see details for options (default: "disease-object")" which properly references the comprehensive list of options documented in the Details section.

Files Modified

• R/alliance.R - Updated roxygen2 documentation comments
• man/count_alliance_records.Rd - Updated generated documentation file

The detailed options for record_lvl remain properly documented in the function's Details section, which lists all four valid values: "full_record", "disease-object", "disease", and "object".

Fixes #8.

Warning

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I tried to connect to the following addresses, but was blocked by firewall rules:

• cloud.r-project.org
  • Triggering command: /usr/lib/R/bin/exec/R -e install.packages(c('roxygen2',~+~'devtools'),~+~repos='REDACTED') (dns block)
• esm.ubuntu.com
  • Triggering command: /usr/lib/apt/methods/https (dns block)

If you need me to access, download, or install something from one of these locations, you can either:

• Configure Actions setup steps to set up my environment, which run before the firewall is enabled
• Add the appropriate URLs or hosts to my firewall allow list

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