WRAN-1239-find-differences-file-graphs

qancode/clickpaths.py

@@ -502,4 +502,75 @@ def perform_action(self):
             self.driver.execute_script('arguments[0].scrollIntoView(true)', item_link)
             self.driver.execute_script('arguments[0].click()', item_link)
         except:
-            pass
+            pass
+
+
+class ClickSearchResultItemAndMakeExperimentPagesLookTheSame:
+    """
+    Clicks the first item on a page of search results.
+    """
+
+    def __init__(self, driver):
+        self.driver = driver
+        self.perform_action()
+
+    def perform_action(self):
+        try:
+            item_link = self.driver.find_element_by_xpath(SearchPageList.search_result_item)
+            self.driver.execute_script('arguments[0].scrollIntoView(true)', item_link)
+            self.driver.execute_script('arguments[0].click()', item_link)
+            self.driver.wait.until(
+                EC.element_to_be_clickable((By.XPATH, ExperimentPage.file_graph_tab_xpath))
+            ).click()
+            self.driver.wait.until(
+                EC.element_to_be_clickable((By.XPATH, ExperimentPage.sort_by_accession_xpath))
+            ).click()
+        except:
+            pass
+
+
+class MakeExperimentPagesLookTheSameByClickingFileTab:
+    """
+    Makes two experiment pages look the same by clicking on the file tab and sorting by accession.
+    """
+
+    def __init__(self, driver):
+        self.driver = driver
+        self.perform_action()
+
+    def perform_action(self):
+        try:
+            self.driver.wait.until(
+                EC.element_to_be_clickable((By.XPATH, ExperimentPage.file_graph_tab_xpath))
+            ).click()
+            self.driver.wait.until(
+                EC.element_to_be_clickable((By.XPATH, ExperimentPage.sort_by_accession_xpath))
+            ).click()
+        except:
+            pass
+
+
+class MakeExperimentPagesLookTheSameByHidingGraph:
+    """
+    Makes two experiment pages look the same by making hiding the file graph. The "include
+    deprecated files" button is also checked in order to get the file status bar to appear.
+    """
+    def __init__(self, driver):
+        self.driver = driver
+        self.perform_action()
+
+    def perform_action(self):
+        try:
+            file_graph = self.driver.wait_long.until(
+                EC.presence_of_element_located((By.ID, ExperimentPage.file_graph_id))
+            )
+            self.driver.execute_script("arguments[0].style.visibility='hidden'", file_graph)
+            checkbox = self.driver.wait.until(
+                EC.element_to_be_clickable(
+                    (By.NAME, ExperimentPage.incl_deprecated_files_button_name)
+                )
+            )
+            if not checkbox.is_selected():
+                checkbox.click()
+        except:
+            pass

qancode/defaults.py

@@ -28,7 +28,11 @@
                          OpenUCSCGenomeBrowserMM10fromExperiment,
                          OpenUCSCGenomeBrowserMM10MinimalfromExperiment,
                          OpenUCSCGenomeBrowserMM9fromExperiment,
-                         ClickSearchResultItem)
+                         ClickSearchResultItem,
+                         ClickSearchResultItemAndMakeExperimentPagesLookTheSame,
+                         MakeExperimentPagesLookTheSameByClickingFileTab,
+                         MakeExperimentPagesLookTheSameByHidingGraph
+                         )
 
 # Default browsers.
 BROWSERS = ['Chrome',
@@ -148,13 +152,19 @@ def _init_default_actions(self):
             ('/biosamples/ENCBS682JHS/', None),
             ('/cart-manager/', None),
             ('/cart-view/', None),
-            ('/experiments/ENCSR000AEH/', None),
-            ('/experiments/ENCSR178NTX/', None),
-            ('/experiments/ENCSR255XZG/', None),
-            ('/experiments/ENCSR651NGR/', None),
-            ('/experiments/ENCSR714GXC/', None),
-            ('/search/?type=Experiment&status=in+progress&audit.INTERNAL_ACTION=%2A&sort=date_created', ClickSearchResultItem),
-            ('/search/?type=Experiment&status=submitted&sort=date_submitted', ClickSearchResultItem),
+            ('/experiments/ENCSR000AEH/', MakeExperimentPagesLookTheSameByClickingFileTab),
+            ('/experiments/ENCSR178NTX/', MakeExperimentPagesLookTheSameByClickingFileTab),
+            ('/experiments/ENCSR255XZG/', MakeExperimentPagesLookTheSameByClickingFileTab),
+            ('/experiments/ENCSR651NGR/', MakeExperimentPagesLookTheSameByHidingGraph),
+            ('/experiments/ENCSR714GXC/', MakeExperimentPagesLookTheSameByHidingGraph),
+            (
+                '/search/?type=Experiment&status=in+progress&audit.INTERNAL_ACTION=%2A&sort=date_created',
+                ClickSearchResultItemAndMakeExperimentPagesLookTheSame
+            ),
+            (
+                '/search/?type=Experiment&status=submitted&sort=date_submitted',
+                ClickSearchResultItemAndMakeExperimentPagesLookTheSame
+            ),
             ('/search/?type=File&status=in+progress&derived_from=%2A&quality_metrics=%2A&sort=date_created', ClickSearchResultItem),
             ('/files/ENCFF703RFN/', None),
             ('/files/ENCFF933XVP/', None),

qancode/pageobjects.py

@@ -75,6 +75,8 @@ class ExperimentPage:
     information_button_relative_xpath = '..//td[1]//span//button//i'
     file_graph_tab_xpath = '//div[@class="tab-nav"]//li[2]'
     assembly_selector_xpath = '/html/body/div[@id="slot-application"]/div[@id="application"]/div[@id="layout"]/div/div[@id="content"]/div/div[@class="done"]/div/div[@class="file-gallery-controls"]//div[@class="file-gallery-controls__assembly-selector"]/select[@class="form-control--select"]'
+    file_graph_id = 'pipeline-graph'
+    incl_deprecated_files_button_name = 'filterIncArchive'
 
 
 class FilePage:

qancode/tasks.py

@@ -547,20 +547,9 @@ def take_screenshot(self):
             self.stitch_image(image_path)
         return image_path
 
-    def make_experiment_pages_look_the_same(self):
-        self.driver.wait.until(EC.element_to_be_clickable(
-            (By.XPATH, ExperimentPage.file_graph_tab_xpath))).click()
-        self.driver.wait.until(EC.element_to_be_clickable(
-            (By.XPATH, ExperimentPage.sort_by_accession_xpath))).click()
-
     def get_data(self):
         self._try_load_item_type()
         self._try_perform_click_path()
-        if 'experiment' in self.driver.current_url.lower():
-            try:
-                self.make_experiment_pages_look_the_same()
-            except:
-                pass
         try:
             self._expand_document_details()
         except:

qancode/worker.py

@@ -1,4 +1,6 @@
 import time
+import sys
+import traceback
 
 from .clickpaths import (DownloadBEDFileFromModal,
                          DownloadBEDFileFromTable,
@@ -76,6 +78,8 @@ def run_task(self):
         except Exception as e:
             print('{}Exception caught: {}{}'.format(
                 bcolors.FAIL, e, bcolors.ENDC))
+            # Print full traceback
+            traceback.print_tb(sys.exc_info()[2])
         finally:
             try:
                 self.driver.quit()