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The filter removed all reads

bugSomething isn't workingSomething isn't working

Status: Open.

#209 In EPPIcenter/mad4hatter;

· MengstEn opened on Mar 31, 2026

handle when param masked ref is provided

Status: Open.

#189 In EPPIcenter/mad4hatter;

· kathrynmurie opened on Jan 29, 2026

undertermined

Status: Open.

#174 In EPPIcenter/mad4hatter;

· andres-ad opened on Nov 20, 2025

Look for potential optimizations during trimAndFilter + PhiX removal

Status: Open.

#117 In EPPIcenter/mad4hatter;

· bgpalmer opened on Sep 28, 2023

long amplicons

Status: Open.

#94 In EPPIcenter/mad4hatter;

· andres-ad opened on Jul 7, 2023

vcf

Status: Open.

#90 In EPPIcenter/mad4hatter;

· andres-ad opened on Jul 5, 2023

Non overlapping truncation length

Status: Open.

#85 In EPPIcenter/mad4hatter;

· andres-ad opened on Jul 5, 2023

Update conda environment with R dependencies

deferred

enhancementNew feature or requestNew feature or request

Status: Open.

#34 In EPPIcenter/mad4hatter;

· ghost opened on Sep 22, 2022

amplicon names in fasta files

deferred

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In EPPIcenter/mad4hatter;

· aarandad opened on Sep 21, 2022