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EleanorSC/README.md

About me:


🛠️ Languages and Tools :

R  Python  Matlab  Jupyter 

My work

I'm a Junior Research Fellow in Applied AI at the University of Oxford. I work across large-scale longitudinal cohort data (UK Biobank, Generation Scotland, Lothian Birth Cohorts, Stratifying Longitudinal Resilience and Depression Cohort, and Theirworld Edinburgh Birth Cohort) using machine learning to identify epigenomic biomarkers of brain ageing

Previosuly I worked as a postdoc in the Lothian Birth Cohorts group at the University of Edinburgh.

Selected publications and research outputs

Reviews and perspectives

  • Epigenetic clocks and DNA methylation biomarkers of brain health and disease
    Nature Reviews Neurology (2025)
    https://doi.org/10.1038/s41582-025-01105-7
    Review of methylation-based biomarkers for brain ageing and neurological disease, with emphasis on translational and clinical relevance.
Details

Original research

  • Brain maps of general cognitive function and spatial correlations with neurobiological cortical profiles
    Translational Psychiatry (2025)
    https://doi.org/10.1038/s41398-025-03009-7
    Large-scale population neuroimaging study deriving brain maps of general cognitive function and quantifying their spatial correspondence with cortical microstructural and neurobiological profiles

  • A comprehensive hierarchical comparison of structural connectomes in major depressive disorder cases versus controls in two large population samples
    Psychological Medicine (2024)
    https://doi.org/10.1017/S0033291724000606
    Multi-cohort comparison of whole-brain structural connectomes identifying reproducible network-level differences associated with major depressive disorder

  • Life-course neighbourhood deprivation and brain structure in older adults
    Molecular Psychiatry (2024)
    https://doi.org/10.1038/s41380-024-02459-3
    Analysis of socioeconomic exposures across the lifecourse in relation to later-life brain structure

  • Epigenetic scores derived in saliva are associated with gestational age at birth
    Clinical Epigenetics (2024)
    https://doi.org/10.1186/s13148-024-01618-5
    Application of epigenetic scoring approaches in early-life cohorts

  • Immuno-epigenetic signature derived in saliva associates with perinatal inflammatory disorders
    Brain, Behavior, and Immunity (2023)
    https://doi.org/10.1016/j.bbi.2023.03.011
    Development and validation of saliva-derived epigenetic signatures of inflammation

  • Blood-based epigenome-wide analyses of cognitive abilities
    Genome Biology (2022)
    https://doi.org/10.1186/s13059-021-02596-8
    Epigenome-wide study identifying DNA methylation signatures associated with cognitive ability

  • DNA methylation and protein markers of chronic inflammation and their associations with brain and cognitive aging
    Neurology (2021)
    https://doi.org/10.1212/WNL.0000000000012997
    Multi-omic analysis linking inflammatory biomarkers with brain structure and cognitive outcomes

  • Structural brain correlates of serum and epigenetic inflammatory markers
    Brain, Behavior, and Immunity (2021)
    https://doi.org/10.1016/j.bbi.2021.03.020
    Neuroimaging study linking circulating and epigenetic markers of inflammation with regional brain structure

A full and up-to-date publication list is available via my Google Scholar:
https://scholar.google.com/citations?user=klj4X0sAAAAJ

Pinned Loading

  1. DNAmArray DNAmArray Public

    Forked from molepi/DNAmArray

    R

  2. spatial_omics_tooling spatial_omics_tooling Public

    Forked from crazyhottommy/awesome_spatial_omics

    tools and notes for spatial omics

  3. atacseq atacseq Public

    Forked from nf-core/atacseq

    ATAC-seq peak-calling and QC analysis pipeline

    Nextflow

  4. Neurophysiology-Teaching Neurophysiology-Teaching Public

    Tutorial teaching on neurophysiology

    Jupyter Notebook

  5. SDC-BIDS-sMRI SDC-BIDS-sMRI Public

    Forked from carpentries-incubator/SDC-BIDS-sMRI

    Structural Neuroimaging Analysis in Python

    Jupyter Notebook

  6. Epigenomics-of-brain-ageing-tissue-concordance Epigenomics-of-brain-ageing-tissue-concordance Public

    TRACE-CpG (Tissue Reference-database for Analysing Concordant-Tissue Epigenetics) is an open resource systematically identifying, harmonising and analysing CpG-level DNA methylation concordance bet…

    R 1