Merge from upstream 2025-08-06 - #5

Merged

gartung merged 121 commits into

fnal-developfrom

maintenance/merge-from-upstream-2025-08-06

Aug 6, 2025

Commits on Jul 29, 2025

Commits on Jul 30, 2025

gha: test source canonicalization (#783)
haampie
authored
81ad98d
formatting: make `ruff check` pass (#865)
tgamblin
authored
b842a29
Fixes to cray* packages (#844)
alalazo
authored
9b6b250
e4s ci: require ~hipblaslt for rocblas (#825)
afzpatel
authored
70cfdbe
kadath: Update source git repo and fix build (#771)
mirenradia
authored
ef4dd70
compadre, py-pycompadre: add v1.6.2 (#870)
kuberry
authored
34bdef7
libx11: add v1.8.12 (#868)
manuelakuhn
authored
dd48b36
exempi: add v2.6.6 and fix compiler dependency (#841)
manuelakuhn
authored
aab4788
py-keras: add v3.11.0 (#867)
adamjstewart
authored
1b976bb
xrootd: add v5.8.4, v5.7.3 (#848)
wdconinc
authored
91b2d36
tempestremap: add v2.2.0 and v2.1.0 : 2.1.5 (#858)

andrewdnolan
and
xylar
authored
0fd7453
yosys: add v0.54, v0.55 (#852)
davekeeshan
authored
b80f5e9
py-datalad: fix py-setuptools restriction for old versions (#851)
manuelakuhn
authored
ed3ba7e
verilator: add v5.038, remove fortran dependency (#850)
davekeeshan
authored
06bcd9b
nco: add 5.3.4 (#833)
andrewdnolan
authored
6bb0e1b
py-datalad-neuroimaging: add v0.3.7 (#843)
manuelakuhn
authored
34a92d9
py-datalad-metalad: add v0.4.22 (#842)
manuelakuhn
authored
81c2c69
py-datalad-metadata-model: add v0.3.11 (#837)
manuelakuhn
authored
ebf4489
netcdf-fortran: add v4.6.2 (#835)

andrewdnolan
and
xylar
authored
5bb9d2c
py-pybind11: add v3.0.0 (#793)
wdconinc
authored
9e0f013
py-scipy: add v1.16.1 (#823)
adamjstewart
authored
4185455
meson: add v1.8.2, v1.7.2 (#811)
wdconinc
authored
8007c8c
pixman: add v0.46.4, v0.44.2 (#810)
wdconinc
authored
ac501c2
assimp: add v6.0.2 (#808)
wdconinc
authored
b2a5965
mlpack: add v4.6.2 (#803)
wdconinc
authored
5666fa6
valgrind: add v3.25.1 (#802)
wdconinc
authored
58276d4
hdfview: add new version and java usage (#487)
Chrismarsh
authored
fd5a697
coin3d: add v4.0.4 (#795)
wdconinc
authored
ff12d45
libftdi: new package (#113)

davekeeshan
and
tldahlgren
authored
6eb67db
ddc: new package (#703)

tretre91
and
tpadioleau
authored
633ec00
py-geemap: add v0.36.0 (#773)
adamjstewart
authored
d8724ac
py-fastapi: fix dependency (#777)
wu-kan
authored
5b95475
bash: add v5.3 (#587)
michaelkuhn
authored
2420226
libaec: add v1.1.1 -> v1.1.4 (#705)
cosunae
authored
63d3063
cutlass: add v4.0.0, v4.1.0 (#667)
wu-kan
authored
c457c24
gdbm: patch nonexistent function (#373)
sethrj
authored
9311ed0
gromacs: add v2024.4, apple-clang openmp support for 2025+ (#61)

authored
a30431e
spiner: add v1.6.4 (#676)
rbberger
authored
506c7f3
py-gpaw: new maintainers and package versions (#361)
alikhamze
authored
ef586f2
fzf: add v0.64.0 (#626)
alecbcs
authored
ee1b48a
javafx: adding v21.0.8 and v17.0.16 (#605)
snehring
authored
7bfe695
Julia: add v1.11.6 (#562)
m-fila
authored
c4d983b
pandoc: add v3.7.0.2 (#748)

manuelakuhn
and
tldahlgren
authored
3dc5f17
CuPy: new version 13.5.1 and fixes (#725)

yizeyi18
and
tldahlgren
authored
9cb8344

Commits on Jul 31, 2025

Commits on Aug 1, 2025

py-huggingface-hub: add v0.33.1 (#820)

wu-kan
and
adamjstewart
authored
4fac4e1
bash: fix checksum and add patches (#887)
manuelakuhn
authored
fa3c4a6
dplasma: new package + required updates to parsec package (#502)
G-Ragghianti
authored
c747f38
formatting: make `ruff format` almost pass (#866)

tgamblin
and
haampie
authored
54f61c4
BlisBase: set `target=` configuration argument (#503)
G-Ragghianti
authored
4748643
py-cartopy: add v0.25.0 (#922)
adamjstewart
authored
c2bb5a6
environment-modules: add v5.6.0 (#916)
xdelaruelle
authored
e041769
py-keras: add v3.11.1 (#913)
adamjstewart
authored
20aa538
py-dunamai: add v1.25.0 (#894)
manuelakuhn
authored
34d5b25
py-duecredit: add v0.10.2 (#892)
manuelakuhn
authored
af0113a
py-distro: add v1.9.0 (#886)
manuelakuhn
authored
08f5f89
ci: add remove package label (#920)
alecbcs
authored
81482b3
py-xhistogram: fix python 3.12 (#898)
Chrismarsh
authored
a9d5a31
miniconda: add New Releases (#915)
huston-rogers
authored
3dc6225

Commits on Aug 2, 2025

curl: add 8.14.1 and 8.15.0 (#739)

tgamblin
and
johnwparent
authored
b0a0ae0
py-libclang: setup.py renamed (#807)
adamjstewart
authored
d49f5ac

Commits on Aug 3, 2025

Commits on Aug 4, 2025

apfel: fix cmake version typo (#928)
wdconinc
authored
ceab894
meep: add fftw-api dependency (#778)

samfux84
and
alalazo
authored
216da05
OpenMPI: can't build with flang 19 and older (#806)
adamjstewart
authored
e1adf72
udunits: Fix download URL (#931)
RemiLacroix-IDRIS
authored
1a476c7
py-numpy-indexed: add new package (#934)
thomas-bouvier
authored
ddaeed7
ruff: check for undefined symbols in packages (#924)

tgamblin
and
haampie
authored
c27b98c

Commits on Aug 5, 2025

undeprecate gcc@12.3.0 (#946)
haampie
authored
d330735
py-matplotlib: add v3.10.5 (#912)
adamjstewart
authored
6a8906e
fltk: add 1.4.3 (#333)
hjjvandam
authored
a8afaa7
expect: Fix build with %gcc@13: (#530)
yizeyi18
authored
77e5734
libssh2: deprecate older versions due to CVEs (#446)
drkrynstrng
authored
06fd537
new packages: nmad, padicotm, pioman, puk, pukabi (#289)
a-denis
authored
e2702ef
macsio: +pdb implies +silo (#948)
haampie
authored
5c113b5
py-rpds-py: depends_on rust type=build (#138)
wdconinc
authored
e5a6490
py-dask_jobqueue: add new package (#923)

Chrismarsh
and
wdconinc
authored
3e277ff
relion: Fix ~cuda variant build (#560)
nboelte
authored
0bac2b2
gobject-introspection: restore setuptools@44: support (#929)

Chrismarsh
and
wdconinc
authored
4b243eb

Commits on Aug 6, 2025

netcdf-fortran: Make sure -fallow-argument-mismatch is added only for gfortran (#950)
msimberg
authored
7800d18
ascent: add version 0.9.4 (#744)
vicentebolea
authored
2cfda67
new py-psycopg2 version (#959)

marcmengel
and
gartung
authored
049cbc3
Bump Spack version (#945)
alalazo
authored
7d20b76
rucio-client: add v37.3.0 (#159)
panta-123
authored
f92941f
py-decorator: add v5.2.1 (#884)
manuelakuhn
authored
2eaa674
py-debugpy: add v1.8.15 (#883)
manuelakuhn
authored
be26b17
prrte: starting from v3.0.1 require pmix v4.2.4 or higher (#938)
harshula
authored
36ce517
chafa: add v1.16.2 (#492)
Buldram
authored
57148e5
py-aniso8601: add v10.0.1 (#590)
manuelakuhn
authored
a273bfa
iwyu,g2,r-curl: requires(pkg) -> requires(^pkg) (#962)
wdconinc
authored
405e977
py-alabaster: add v1.0.0 (#589)
manuelakuhn
authored
ab94c99
amrex: add v25.08 (#954)
WeiqunZhang
authored
5aa70b1
environment-modules: fix X variant + fix v3.2 build + add new-features variant (#952)
xdelaruelle
authored
cf2e2f7
beast2: adding v2.7.7 (#604)
snehring
authored
2282554
verible: add v0.0.4013 (#855)
davekeeshan
authored
7e2f78a
py-pytest: add v8.2.2, v8.3.5, v8.4.1 (#862)
wdconinc
authored
9c5ce59
GSL: fix configure args for external cblas (#943)
jgraciahlrs
authored
5acbd5c
pdf2svg: add v0.2.4 (#942)
rbberger
authored
eaa42dd
parthenon: add correct language dependencies (#940)
tukss
authored
01abbf3
parallel-netcdf: add v1.14.1 (#936)
andrewdnolan
authored
ce83510
(py-)fenics-dolfinx: dependency fixes and improvements (#914)
garth-wells
authored
9b97173
papi: add v7.2.0 (#535)
G-Ragghianti
authored
30eda29
prrte: add constraint on PMIx version (#917)
w8jcik
authored
0c328dd
ports_of_call: kokkos bugfix and update c dependency (#910)
rbberger
authored
c9f6321
py-orjson: fix bug and and add v3.11.1 (#906)
wu-kan
authored
5e7480f
py-altair: fix python dependency and add v5.5.0 (#882)
wu-kan
authored
2d28503
linaro-forge: add v25.0.2 (#895)
kenche-linaro
authored
7801e9a
dakota: add hdf5 variant, use cxx14, model trilinos dependency (#889)
becker33
authored
b535be1
mochi-margo: added version 0.19.1 and 0.19.2 (#888)
mdorier
authored
41c963d
meshlab: depends_on qt +ssl (#878)
wdconinc
authored
38620fa
hpx: add option for the lci parcelport (#941)
JiakunYan
authored
121c953
Merge remote-tracking branch 'upstream/develop' into maintenance/merge-from-upstream-2025-08-06
greenc-FNAL
committed
11bdf2c