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Add missing ClinVar pathogenicity values#6

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kubacech wants to merge 1 commit into
GENERALBYTESCOM:mainfrom
kubacech:feature/add-missing-clinvar-pathogenicity-values
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Add missing ClinVar pathogenicity values#6
kubacech wants to merge 1 commit into
GENERALBYTESCOM:mainfrom
kubacech:feature/add-missing-clinvar-pathogenicity-values

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Summary

  • Add low penetrance combinations (likely pathogenic, low penetrance, pathogenic, low penetrance)
  • Add VUS sub-classifications (vus-high, vus-mid, vus-low) from ClinVar 2025+
  • Add conflicting classifications of oncogenicity
  • Add additional somatic tiers (tier iii - uncertain significance, tier iv - benign/likely benign)

These values are encountered when processing recent ClinVar XML releases and cause InvalidDataException without this fix.

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