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Compatibility with scnanoseq and others

Status: Open.

#18 In Genentech/Isosceles;

· josiegleeson opened on Oct 14, 2025

Error with using singularity

Status: Open.

#17 In Genentech/Isosceles;

· Haisuccess93 opened on Jul 16, 2025

Low percentage of reads assigned to provided transcript set

Status: Open.

#16 In Genentech/Isosceles;

· wongjy2 opened on Jul 6, 2025

Data preparation for PacBio MAS-Isoseq

Status: Open.

#15 In Genentech/Isosceles;

· hwismer opened on Jun 23, 2025

tcc_to_gene SparseArray too many groups (matrix of sums will be too big)

Status: Open.

#14 In Genentech/Isosceles;

· zihian opened on May 5, 2025

Comparing conditions in bulk data

Status: Open.

#13 In Genentech/Isosceles;

· Appenzee opened on Feb 5, 2025

Merge transcript quantification reseults (RangedSummarizedExperiment) of multiple samples

Status: Open.

#12 In Genentech/Isosceles;

· WhaleGe opened on Dec 31, 2024

Best Step for Running SQANTI3 Filtering on Isoforms

Status: Open.

#11 In Genentech/Isosceles;

· skudashev opened on Oct 28, 2024

Read to Isoforms Mapping

Status: Open.

#10 In Genentech/Isosceles;

· shizhuom opened on Oct 21, 2024

<code>export_gtf</code> returns only exons

Status: Open.

#8 In Genentech/Isosceles;

· sbresnahan opened on Sep 30, 2024

prepare_transcripts range width limit error

Status: Open.

#7 In Genentech/Isosceles;

· sbresnahan opened on Sep 28, 2024

Alternatives for DEXSeq DEU test

Status: Open.

#6 In Genentech/Isosceles;

· mcortes-lopez opened on Mar 3, 2024