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SimpleStochastic
SimpleStochastic
 
 
dynamicalFeverShiny
dynamicalFeverShiny
 
 
gillespie
gillespie
 
 
git_push
git_push
 
 
outputs
outputs
 
 
pipelines
pipelines
 
 
sampling_JD
sampling_JD
 
 
testing
testing
 
 
.Rapp.history
.Rapp.history
 
 
.gitignore
.gitignore
 
 
DerivExponential.R
DerivExponential.R
 
 
HetSIR.R
HetSIR.R
 
 
HetSIR_functions.Rdata
HetSIR_functions.Rdata
 
 
ICI3D_Ex1_StochasticSpillover.R
ICI3D_Ex1_StochasticSpillover.R
 
 
ICI3D_Ex1_StochasticSpillover_functions.R
ICI3D_Ex1_StochasticSpillover_functions.R
 
 
ICI3D_Example_binomialDistribution.R
ICI3D_Example_binomialDistribution.R
 
 
ICI3D_Example_chainBinom.R
ICI3D_Example_chainBinom.R
 
 
ICI3D_Heterogeneous_Groups.R
ICI3D_Heterogeneous_Groups.R
 
 
ICI3D_Lab1_ODEmodels.R
ICI3D_Lab1_ODEmodels.R
 
 
ICI3D_Lab2_Heterogeneity.R
ICI3D_Lab2_Heterogeneity.R
 
 
ICI3D_Lab3_EpiStudyDesign.R
ICI3D_Lab3_EpiStudyDesign.R
 
 
ICI3D_Lab3_EpiStudyDesign.answers.R
ICI3D_Lab3_EpiStudyDesign.answers.R
 
 
ICI3D_Lab4_RCT.R
ICI3D_Lab4_RCT.R
 
 
ICI3D_Lab5_introLikelihood.R
ICI3D_Lab5_introLikelihood.R
 
 
ICI3D_Lab5a_introLikelihoodPlusRejectionP.R
ICI3D_Lab5a_introLikelihoodPlusRejectionP.R
 
 
ICI3D_Lab6_MLE_SIV_HIV.R
ICI3D_Lab6_MLE_SIV_HIV.R
 
 
ICI3D_Lab7_MCMC-Binomial.R
ICI3D_Lab7_MCMC-Binomial.R
 
 
ICI3D_Lab8_MCMC-SI_HIV.R
ICI3D_Lab8_MCMC-SI_HIV.R
 
 
ICI3D_Lab_Heterogeneous_Groups.R
ICI3D_Lab_Heterogeneous_Groups.R
 
 
ICI3D_Lab_SampDistrVariability.R
ICI3D_Lab_SampDistrVariability.R
 
 
ICI3D_RTutorial_0.R
ICI3D_RTutorial_0.R
 
 
ICI3D_RTutorial_1.R
ICI3D_RTutorial_1.R
 
 
ICI3D_RTutorial_2.R
ICI3D_RTutorial_2.R
 
 
ICI3D_RTutorial_3.R
ICI3D_RTutorial_3.R
 
 
ICI3D_RTutorial_4_VisualizingData.R
ICI3D_RTutorial_4_VisualizingData.R
 
 
ICI3D_RTutorial_5_DataCleaning.R
ICI3D_RTutorial_5_DataCleaning.R
 
 
ICI3D_RtvTutorial_4.R
ICI3D_RtvTutorial_4.R
 
 
ICI3D_spillover_introductions.R
ICI3D_spillover_introductions.R
 
 
MCMC_SI_runs.Rdata
MCMC_SI_runs.Rdata
 
 
Makefile
Makefile
 
 
Mutxt.Rdata
Mutxt.Rdata
 
 
ParticipatoryDynamicModel_TB.R
ParticipatoryDynamicModel_TB.R
 
 
README.md
README.md
 
 
RTutorials.Rproj
RTutorials.Rproj
 
 
batch.md
batch.md
 
 
batch.pl
batch.pl
 
 
binomialDistribution.R
binomialDistribution.R
 
 
boxcars.R
boxcars.R
 
 
content.mk
content.mk
 
 
dynamicalFever.Rproj
dynamicalFever.Rproj
 
 
dynamicalFeverData.Rdata
dynamicalFeverData.Rdata
 
 
dynamicalFeverModelScript.R
dynamicalFeverModelScript.R
 
 
dynamicalFeverScript.R
dynamicalFeverScript.R
 
 
dynamicalFeverSlideset.pdf
dynamicalFeverSlideset.pdf
 
 
hetSIR.Rdata
hetSIR.Rdata
 
 
hetSIRfxnMASTER.R
hetSIRfxnMASTER.R
 
 
hetero_play.R
hetero_play.R
 
 
hivAndFertility.R
hivAndFertility.R
 
 
hivAndFertilityExtension.R
hivAndFertilityExtension.R
 
 
introRstudio.R
introRstudio.R
 
 
issue.md
issue.md
 
 
labNow.R
labNow.R
 
 
librariesNeeded.R
librariesNeeded.R
 
 
mpLabCompartmental.R
mpLabCompartmental.R
 
 
mpLabFitting.R
mpLabFitting.R
 
 
mpNotesCompartmental.R
mpNotesCompartmental.R
 
 
names.txt
names.txt
 
 
particCodingDynMod2016.R
particCodingDynMod2016.R
 
 
particCoding_Rabies2017.R
particCoding_Rabies2017.R
 
 
participatoryCoding2016.R
participatoryCoding2016.R
 
 
participatoryCoding_HIVTB.R
participatoryCoding_HIVTB.R
 
 
participatoryCoding_IRSmalaria2014.R
participatoryCoding_IRSmalaria2014.R
 
 
participatoryCoding_MalariaITN_2017.R
participatoryCoding_MalariaITN_2017.R
 
 
participatoryDesign2021.R
participatoryDesign2021.R
 
 
participatoryDynamics2025.R
participatoryDynamics2025.R
 
 
participatory_coding_2024.R
participatory_coding_2024.R
 
 
particpatoryDynamics.R
particpatoryDynamics.R
 
 
projectCode.R
projectCode.R
 
 
seir.R
seir.R
 
 
seir.w.seasonal.R
seir.w.seasonal.R
 
 
seir_cumInc.R
seir_cumInc.R
 
 

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ICI3D R tutorials

This repository contains tutorials for the MMED and DAIDD clinics.

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ICI3D R tutorials

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