Skip to content

had forgotten to deduplicate WWARN pd against GEOFF #56

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
bobverity merged 1 commit into from
Dec 19, 2025
Merged

had forgotten to deduplicate WWARN pd against GEOFF #56

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 9 additions & 0 deletions analysis/07_read_wwarn_pd.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -63,6 +63,15 @@ wwarn_pd <- wwarn_pd |>
wwarn_pd <- wwarn_pd |>
filter(!is.na(PMID))

# drop studies already in GEOFF
s <- readRDS(here("analysis", "data-derived", "geoff_STAVE.rds"))
PMID_geoff <- s$get_studies() |>
filter(!is.na(PMID)) |>
pull(PMID)

wwarn_pd <- wwarn_pd|>
filter(!(PMID %in% PMID_geoff))

# remove specific PMIDs
wwarn_pd <- wwarn_pd |>
filter(PMID != 26236581) |> # data has some issues (numerator doesn't sum to denominator) and the original paper does not provide sufficient detail to correct
Expand Down
Binary file modified analysis/data-derived/wwarn_pd_clean.rds
View file
Open in desktop
Binary file not shown.
Loading