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2 changes: 1 addition & 1 deletion analysis/12_plot_samples.R
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ library(here)
library(STAVE)

# read in combined STAVE object
s <- readRDS(here("analysis", "data-out", "stave_data_2026.03.08.rds"))
s <- readRDS(here("analysis", "data-out", "stave_data_2026.03.13.rds"))

# get WHO positions
k13_dictionary <- read.csv(here("analysis", "data-raw", "k13_ref_protein_codon_dictionary.csv")) |>
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Binary file modified analysis/data-derived/geoff_STAVE.rds
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Binary file modified analysis/data-out/stave_data_2026.03.13.rds
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