fix(image-io): resolve IWI CBOR round-trip corruption for uint8 images

.github/workflows/examples.yml

@@ -13,7 +13,7 @@ jobs:
     name: node-js
     runs-on: ubuntu-24.04
 
-    
+
     steps:
     - uses: actions/checkout@v6.0.2
 

.github/workflows/playwright.yml

@@ -90,9 +90,11 @@ jobs:
           large-packages: false
           tool-cache: true
 
-      - name: Pull latest Docker images
-        run: |
-          ./src/docker/pull.sh --no-debug
+      - uses: nick-fields/retry@v3
+        with:
+          max_attempts: 5
+          timeout_minutes: 10
+          command: ./src/docker/pull.sh --no-debug
 
       - name: Install
         uses: pnpm/action-setup@v5
@@ -227,10 +229,13 @@ jobs:
     - name: Free Disk Space (Ubuntu)
       uses: jlumbroso/free-disk-space@main
 
-    - name: Pull latest Docker images
+    - uses: nick-fields/retry@v3
       working-directory: ./
-      run: |
-        ./src/docker/pull.sh --no-debug
+      name: Pull latest Docker images
+      with:
+        max_attempts: 5
+        timeout_minutes: 10
+        command: ./src/docker/pull.sh --no-debug
 
     - uses: actions/setup-node@v6
       with:

examples/debugging/package.json

@@ -6,13 +6,13 @@
     "build": "npm run native-build && npm run emscripten-build-release && npm run emscripten-build-debug && npm run wasi-build-release && npm run wasi-build-debug",
     "native-build": "cmake -Bbuild -S. -DCMAKE_BUILD_TYPE=Debug && cmake --build build/ --config Debug",
     "native-debug-linux": "gdb --args ./build/DebugMe",
-    "emscripten-build-release": "itk-wasm -i quay.io/itkwasm/emscripten:latest --build-dir emscripten-build-release build",
+    "emscripten-build-release": "itk-wasm -i docker.io/itkwasm/emscripten:latest --build-dir emscripten-build-release build",
     "run-node-release": "node ./runEmscriptenNode.js ./emscripten-build-release/DebugMe",
-    "emscripten-build-debug": "itk-wasm -i quay.io/itkwasm/emscripten:latest-debug --build-dir emscripten-build-debug build -- -DCMAKE_BUILD_TYPE=Debug",
+    "emscripten-build-debug": "itk-wasm -i docker.io/itkwasm/emscripten:latest-debug --build-dir emscripten-build-debug build -- -DCMAKE_BUILD_TYPE=Debug",
     "run-node-debug": "node ./runEmscriptenNode.js ./emscripten-build-debug/DebugMe",
-    "wasi-build-release": "itk-wasm -i quay.io/itkwasm/wasi:latest --build-dir wasi-build-release build",
+    "wasi-build-release": "itk-wasm -i docker.io/itkwasm/wasi:latest --build-dir wasi-build-release build",
     "node-inspect": "node --inspect-brk ./runEmscriptenNode.js ./emscripten-build-debug/DebugMe",
-    "wasi-build-debug": "itk-wasm -i quay.io/itkwasm/wasi:latest-debug --build-dir wasi-build-debug build -- -DCMAKE_BUILD_TYPE=Debug",
+    "wasi-build-debug": "itk-wasm -i docker.io/itkwasm/wasi:latest-debug --build-dir wasi-build-debug build -- -DCMAKE_BUILD_TYPE=Debug",
     "run-wasi-debug": "itk-wasm --build-dir wasi-build-debug run DebugMe.wasi.wasm",
     "start": "http-server -o"
   },

examples/different-input-types/package.json

@@ -5,7 +5,7 @@
   "type": "module",
   "scripts": {
     "build": "pnpm run build:wasi",
-    "build:wasi": "itk-wasm -b wasi-build -i quay.io/itkwasm/wasi:latest build",
+    "build:wasi": "itk-wasm -b wasi-build -i docker.io/itkwasm/wasi:latest build",
     "test": "pnpm run test:wasi",
     "test:wasi": "itk-wasm -b wasi-build run different-input-types.wasi.wasm -- ./Gourds.png label.png overlay.png",
     "test:wasi:help": "itk-wasm -b wasi-build run different-input-types.wasi.wasm -- --help"

examples/hello-world/package.json

@@ -6,16 +6,16 @@
   "type": "module",
   "scripts": {
     "build": "pnpm run build:wasi && pnpm run build:emscripten",
-    "build:wasi": "itk-wasm -i quay.io/itkwasm/wasi:latest build",
-    "build:emscripten": "itk-wasm build",
+    "build:wasi": "itk-wasm -i docker.io/itkwasm/wasi:latest build",
+    "build:emscripten": "itk-wasm -i docker.io/itkwasm/emscripten:latest build",
     "test": "pnpm run test:wasi && pnpm run test:node && pnpm run test:browser",
     "test:wasi": "pnpx itk-wasm run wasi-build/hello.wasi.wasm",
     "test:node": "node ./index.mjs",
     "start": "http-server --cors -p 8083",
     "test:browser": "playwright test",
     "test:browser:debug": "playwright test --debug"
   },
-  "author": "Matt McCormick <matt@mmmccormick.com>",
+  "author": "Matt McCormick <matt@fideus.io>",
   "license": "Apache-2.0",
   "dependencies": {
     "fs-extra": "^11.1.0",

examples/inputs-outputs/package.json

@@ -10,8 +10,8 @@
       "https://github.com/InsightSoftwareConsortium/ITK-Wasm/releases/download/itk-wasm-v1.0.0-b.179/sample-data.tar.gz",
       "https://bafybeidxatrsrrphfmntdyze6ec3jbiak527wj3kalwjptv4bimpcnzxdq.ipfs.w3s.link/ipfs/bafybeidxatrsrrphfmntdyze6ec3jbiak527wj3kalwjptv4bimpcnzxdq/sample-data.tar.gz"
     ],
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "typescript-package-name": "@itk-wasm/inputs-outputs-example",
     "python-package-name": "itkwasm-inputs-outputs-example",
     "package-description": "An example that has non-trivial inputs and outputs.",

examples/mean-squares-versor-registration/package.json

@@ -10,8 +10,8 @@
       "https://github.com/InsightSoftwareConsortium/ITK-Wasm/releases/download/itk-wasm-v1.0.0-b.179/sample-data.tar.gz",
       "https://bafybeidxatrsrrphfmntdyze6ec3jbiak527wj3kalwjptv4bimpcnzxdq.ipfs.w3s.link/ipfs/bafybeidxatrsrrphfmntdyze6ec3jbiak527wj3kalwjptv4bimpcnzxdq/sample-data.tar.gz"
     ],
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "typescript-package-name": "@itk-wasm/mean-squares-versor-registration-example",
     "python-package-name": "itkwasm-mean-squares-versor-registration-example",
     "package-description": "Example 3D versor transform registration with a mean-squares similarity metric",

include/itkComponentTypesJSON.h

@@ -41,7 +41,7 @@ template <>
 struct glz::meta<itk::JSONComponentTypesEnum>
 {
   using enum itk::JSONComponentTypesEnum;
-  static constexpr auto value = glz::enumerate(int8, uint8, int16, uint16, int32, uint32, int64, float32, float64);
+  static constexpr auto value = glz::enumerate(int8, uint8, int16, uint16, int32, uint32, int64, uint64, float32, float64);
 };
 
 #endif // itkComponentTypesJSON_h

packages/compare-images/package.json

@@ -5,8 +5,8 @@
   "description": "@itk-wasm/compare-stringify build configuration",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "test-data-hash": "bafybeiafli6egtmkcgany65po64w67hpqnmgwr5utqo6ycbbz7k5l33llu",
     "test-data-urls": [
       "https://github.com/InsightSoftwareConsortium/ITK-Wasm/releases/download/itk-wasm-v1.0.0-b.171/compare-images-test-data.tar.gz"

packages/compare-meshes/package.json

@@ -5,8 +5,8 @@
   "description": "@itk-wasm/compare-meshes build configuration.",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "test-data-hash": "bafkreibsonywg3w3gscmookip3elsyydfsn2cbubk6dukatkmjgeguhiri",
     "test-data-urls": [
       "https://github.com/InsightSoftwareConsortium/ITK-Wasm/releases/download/itk-wasm-v1.0.0-b.178/compare-meshes-data.tar.gz"

packages/compress-stringify/package.json

@@ -5,8 +5,8 @@
   "description": "@itk-wasm/compare-stringify build configuration.",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "test-data-hash": "bafkreiha6oye3fd5cxfadnua5r2jlkaco2xuyeek454d2ihiffsx7rauqe",
     "test-data-urls": [
       "https://placeholder"

packages/core/typescript/itk-wasm/package.json

@@ -33,15 +33,15 @@
     "test:lint": "ts-standard --fix \"src/**/*.ts\" && standard --fix \"test/node/**/*.js\"",
     "test:node": "ava test/node/**/*.js",
     "test:testPipelines": "pnpm test:buildTestPipelines:emscripten && pnpm test:buildTestPipelines:wasi && pnpm test:runTestPipelines",
-    "test:buildTestPipelines:emscripten:debug": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest-debug -b emscripten-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
-    "test:buildTestPipelines:emscripten": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest -b emscripten-build -s ./test/pipelines build",
-    "test:buildTestPipelines:emscriptenThreads:debug": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest-threads-debug -b emscripten-threads-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
-    "test:buildTestPipelines:emscriptenThreads": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest-threads -b emscripten-threads-build -s ./test/pipelines build",
-    "test:buildTestPipelines:wasi": "node src/itk-wasm-cli.js -i quay.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines build",
-    "test:buildTestPipelines:wasi:debug": "node src/itk-wasm-cli.js -i quay.io/itkwasm/wasi:latest-debug -b wasi-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
-    "test:runTestPipelines": "node src/itk-wasm-cli.js -i quay.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines run -r wasmtime stdout-stderr-pipeline/stdout-stderr-test.wasi.wasm",
-    "test:bindgenTestPipelines:typescript": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest -b emscripten-build -s ./test/pipelines/ bindgen --package-version 1.0.0 --package-name test-pipelines --package-description \"Exercise interface types for bindgen\"",
-    "test:bindgenTestPipelines:python": "node src/itk-wasm-cli.js -i quay.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines/ bindgen --interface python --package-version 1.0.0 --package-name test-pipelines --package-description \"Exercise interface types for bindgen\"",
+    "test:buildTestPipelines:emscripten:debug": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest-debug -b emscripten-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
+    "test:buildTestPipelines:emscripten": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest -b emscripten-build -s ./test/pipelines build",
+    "test:buildTestPipelines:emscriptenThreads:debug": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest-threads-debug -b emscripten-threads-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
+    "test:buildTestPipelines:emscriptenThreads": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest-threads -b emscripten-threads-build -s ./test/pipelines build",
+    "test:buildTestPipelines:wasi": "node src/itk-wasm-cli.js -i docker.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines build",
+    "test:buildTestPipelines:wasi:debug": "node src/itk-wasm-cli.js -i docker.io/itkwasm/wasi:latest-debug -b wasi-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
+    "test:runTestPipelines": "node src/itk-wasm-cli.js -i docker.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines run -r wasmtime stdout-stderr-pipeline/stdout-stderr-test.wasi.wasm",
+    "test:bindgenTestPipelines:typescript": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest -b emscripten-build -s ./test/pipelines/ bindgen --package-version 1.0.0 --package-name test-pipelines --package-description \"Exercise interface types for bindgen\"",
+    "test:bindgenTestPipelines:python": "node src/itk-wasm-cli.js -i docker.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines/ bindgen --interface python --package-version 1.0.0 --package-name test-pipelines --package-description \"Exercise interface types for bindgen\"",
     "test:browser": "playwright test",
     "test:browser:ui": "playwright test --ui",
     "test:browser:debug": "playwright test --debug",

packages/core/typescript/itk-wasm/src/cli/default-image-tag.js

@@ -1,2 +1,2 @@
-const defaultImageTag = '20250813-cd217d20'
+const defaultImageTag = '20260217-a59552778'
 export default defaultImageTag

packages/core/typescript/itk-wasm/src/cli/pnpm-script.js

@@ -96,7 +96,7 @@ async function pnpmScript(name, extraArgs, options) {
             options,
             packageJson,
             undefined
-          ) ?? `quay.io/itkwasm/emscripten:${defaultImageTag}`
+          ) ?? `docker.io/itkwasm/emscripten:${defaultImageTag}`
         pnpmCommand = pnpmCommand.concat(['-i', emscriptenDockerImage])
       }
       break
@@ -109,7 +109,7 @@ async function pnpmScript(name, extraArgs, options) {
             options,
             packageJson,
             undefined
-          ) ?? `quay.io/itkwasm/emscripten:${defaultImageTag}`
+          ) ?? `docker.io/itkwasm/emscripten:${defaultImageTag}`
         // Currently, we expect the debug docker image to be tagged with -debug
         pnpmCommand = pnpmCommand.concat([
           '-i',
@@ -126,7 +126,7 @@ async function pnpmScript(name, extraArgs, options) {
         pnpmCommand = pnpmCommand.concat(['itk-wasm', 'build'])
         const wasiDockerImage =
           configValue('wasi-docker-image', options, packageJson, undefined) ??
-          `quay.io/itkwasm/wasi:${defaultImageTag}`
+          `docker.io/itkwasm/wasi:${defaultImageTag}`
         pnpmCommand = pnpmCommand.concat(['-i', wasiDockerImage])
       }
       break
@@ -135,7 +135,7 @@ async function pnpmScript(name, extraArgs, options) {
         pnpmCommand = pnpmCommand.concat(['itk-wasm', 'build'])
         const wasiDockerImage =
           configValue('wasi-docker-image', options, packageJson, undefined) ??
-          `quay.io/itkwasm/wasi:${defaultImageTag}`
+          `docker.io/itkwasm/wasi:${defaultImageTag}`
         // Currently, we expect the debug docker image to be tagged with -debug
         pnpmCommand = pnpmCommand.concat(['-i', `${wasiDockerImage}-debug`])
         pnpmCommand = pnpmCommand.concat([
@@ -203,7 +203,7 @@ async function pnpmScript(name, extraArgs, options) {
             options,
             packageJson,
             undefined
-          ) ?? `quay.io/itkwasm/emscripten:${defaultImageTag}`
+          ) ?? `docker.io/itkwasm/emscripten:${defaultImageTag}`
         const packageDescription = configValue(
           'package-description',
           options,
@@ -262,7 +262,7 @@ async function pnpmScript(name, extraArgs, options) {
         )
         const wasiDockerImage =
           configValue('wasi-docker-image', options, packageJson, undefined) ??
-          `quay.io/itkwasm/wasi:${defaultImageTag}`
+          `docker.io/itkwasm/wasi:${defaultImageTag}`
         pnpmCommand = pnpmCommand.concat([
           'itk-wasm',
           '-b',

packages/core/typescript/itk-wasm/src/cli/process-common-options.js

@@ -11,11 +11,11 @@ function processCommonOptions(program, wasiDefault = false) {
 
   const ociExePath = findOciExe()
 
-  let dockerImage = `quay.io/itkwasm/emscripten:${defaultImageTag}`
+  let dockerImage = `docker.io/itkwasm/emscripten:${defaultImageTag}`
   if (options.image) {
     dockerImage = options.image
     if (dockerImage === 'itkwasm/wasi') {
-      dockerImage = `quay.io/itkwasm/wasi:${defaultImageTag}`
+      dockerImage = `docker.io/itkwasm/wasi:${defaultImageTag}`
     }
   }
 

packages/dicom/package.json

@@ -12,8 +12,8 @@
       "https://bafybeiaqy5uzmsxkssdwu66foicuodlrxueczmtouz254hgr2azx6xnjwa.ipfs.w3s.link/data.tar.gz",
       "https://bafybeiaqy5uzmsxkssdwu66foicuodlrxueczmtouz254hgr2azx6xnjwa.ipfs.w3s.link/ipfs/bafybeiaqy5uzmsxkssdwu66foicuodlrxueczmtouz254hgr2azx6xnjwa/data.tar.gz"
     ],
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "typescript-package-name": "@itk-wasm/dicom",
     "python-package-name": "itkwasm-dicom",
     "package-description": "Read and write files and images related to DICOM file format.",

packages/downsample/package.json

@@ -5,8 +5,8 @@
   "description": "Pipelines for downsampling images.",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "test-data-hash": "bafkreigtrr3oeqaunbyhrpuvvhc5hfmpbddc4u52jvonsvr2m2xe5ni3jq",
     "test-data-urls": [
       "https://itk.mypinata.cloud/ipfs/bafkreigtrr3oeqaunbyhrpuvvhc5hfmpbddc4u52jvonsvr2m2xe5ni3jq"

packages/image-io/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@itk-wasm/image-io-build",
-  "version": "1.6.0",
+  "version": "1.6.1",
   "private": true,
   "description": "Input and output for scientific and medical image file formats.",
   "type": "module",
@@ -10,8 +10,8 @@
       "https://itk.mypinata.cloud/ipfs/bafybeidxwcsazmgzcejlhm233y5rkaphhfxvgbnqfw3ckrrly3tv6vrtnu/data.tar.gz",
       "https://w3s.link/ipfs/bafybeidxwcsazmgzcejlhm233y5rkaphhfxvgbnqfw3ckrrly3tv6vrtnu/data.tar.gz"
     ],
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "typescript-package-name": "@itk-wasm/image-io",
     "python-package-name": "itkwasm-image-io",
     "package-description": "Input and output for scientific and medical image file formats.",

packages/image-io/python/itkwasm-image-io-emscripten/itkwasm_image_io_emscripten/_version.py

@@ -1 +1 @@
-__version__ = "1.6.0"
+__version__ = "1.6.1"

packages/image-io/python/itkwasm-image-io-wasi/itkwasm_image_io_wasi/_version.py

@@ -1 +1 @@
-__version__ = "1.6.0"
+__version__ = "1.6.1"