To create a mesh, run:
C:\SALOME-9.8.0\run_salome.bat -t mesh_with_salome.py
You may need to replace the path to run_salome.bat.
This will create a .med file.
Then to convert the .med file in .xdmf files (readable by FESTIM), run:
python convert_mesh.py
If needed, install meshio with:
pip install meshio[all]
Run a FEniCS container:
docker run -ti -v ${PWD}:/home/fenics/shared quay.io/fenicsproject/stable:latest
Install FESTIM v0.10.0:
pip install git+https://github.com/RemDelaporteMathurin/FESTIM@v0.10.0
To run the FESTIM simulation:
python main.py
This will produce several .xdmf files