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Quick Setup:

Prerequisites

  • Docker(v27.4.0+)

Nota Bene: Ensure you have both .env (for Django) and .env (for Next.js) files set up with required environment variables. Request sample from us.
To populate the database before starting the server, ensure a data directory containing the necessary FASTA files is created within the backend directory.

.
├── backend
│   ├── .env
│   ├── AccessControl
│   ├── GenAnnot
│   ├── GeneAtlas
│   ├── data
│   │   ├── Escherichia_coli_cft073.fa
│   │   ├── Escherichia_coli_cft073_cds.fa
│   │   ├── Escherichia_coli_cft073_pep.fa
│   │   ├── Escherichia_coli_o157_h7_str_edl933.fa
│   │   ├── Escherichia_coli_o157_h7_str_edl933_cds.fa
│   │   ├── Escherichia_coli_o157_h7_str_edl933_pep.fa
│   │   ├── Escherichia_coli_str_k_12_substr_mg1655.fa
│   │   ├── Escherichia_coli_str_k_12_substr_mg1655_cds.fa
│   │   ├── Escherichia_coli_str_k_12_substr_mg1655_pep.fa
│   │   ├── new_coli.fa
│   │   ├── new_coli_cds.fa
│   │   └── new_coli_pep.fa
│   ├── ...
│   ├── manage.py
├── frontend
│   ├── .env

🚀 Launch the website

git clone https://github.com/Jaffar-Hussein/GenAnnotator/tree/master
cd GenAnnotator
docker compose up

Backend runs at http://localhost:8000

Frontend runs at http://localhost:3000

📖 Documentation

Check out our GitBook for full user guides and instructions!

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A monolith django & Nextjs app for annotating bacterial genomes

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