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Gene annotations are missing from final plots

Status: Open.

#60 In KolmogorovLab/Wakhan;

· Patricie34 opened on Apr 16, 2026

--without-phasing mode: vcf_output missing despite bed_output being generated and no ploidy/purity estimation

Status: Open.

#59 In KolmogorovLab/Wakhan;

· sandratra-rab opened on Apr 15, 2026

Force ploidy on sample + HP tag on chrX/Y

Status: Open.

#57 In KolmogorovLab/Wakhan;

· Hugbenny opened on Mar 29, 2026

Axes object is not subscriptable

Status: Open.

#56 In KolmogorovLab/Wakhan;

· zeeev opened on Mar 7, 2026

missing coverage_ps.csv file

Status: Open.

#52 In KolmogorovLab/Wakhan;

· Larrycpan opened on Jan 20, 2026

Severus somatic VS germline SVs in tumor-only mode

Status: Open.

#47 In KolmogorovLab/Wakhan;

· criptana7 opened on Nov 20, 2025

Lost haplotype after hapcorrection

Status: Open.

#46 In KolmogorovLab/Wakhan;

· pabloangulo7 opened on Nov 19, 2025

Error in get_snps_frquncies_coverage function during hapcorrect module

Status: Open.

#45 In KolmogorovLab/Wakhan;

· pabloangulo7 opened on Nov 18, 2025

crash when plotting purity/ploidy

Status: Open.

#44 In KolmogorovLab/Wakhan;

· apsteinberg opened on Nov 7, 2025

ploidy/purity out of range of default values

Status: Open.

#42 In KolmogorovLab/Wakhan;

· abigail-hyde opened on Oct 22, 2025

Best practice Wakhan

Status: Open.

#41 In KolmogorovLab/Wakhan;

· ljwharbers opened on Oct 10, 2025

Disable plotting LOH regions in CN plots (enabled by default)

Status: Open.

#40 In KolmogorovLab/Wakhan;

· villena-francis opened on Oct 6, 2025