feat(consolidate): heliosBench integration/consolidate

[KooshaPari]

Block B consolidation PR — Python benchmark tool. CI must pass before merge.

[gemini-code-assist]

Code Review

This pull request updates the README.md file by adding a work-state comment at the top to track the progress of Block B consolidation. There are no review comments, and I have no feedback to provide.

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[sonarqubecloud]

Quality Gate failed

Failed conditions
3 Security Hotspots

See analysis details on SonarQube Cloud

[gemini-code-assist]

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[kilo-code-bot]

Code Review Summary

Status: 2 Issues Found | Recommendation: Request Changes

Overview

Severity	Count
CRITICAL	2
WARNING	2
SUGGESTION	2

Headline issues:

• The new journey-gate.yml is effectively a no-op: it installs Rust toolchain in a Python repo and iterates an empty journeys/*.toml glob, so it always passes.
• Both new workflow files pin to mutable refs (@main) for third-party actions / crates — supply-chain risk.

Issue Details

File	Line	Severity	Issue
.github/workflows/journey-gate.yml	19	WARNING	Rust toolchain installed in a Python-only repo; Swatinem/rust-cache is a no-op.
.github/workflows/journey-gate.yml	24	WARNING	cargo install --git ... with mutable main ref, no --locked/SHA pin.
.github/workflows/journey-gate.yml	28	CRITICAL	journeys/*.toml matches zero files in this repo; gate is silently vacuous.
.github/workflows/trufflehog.yml	23	CRITICAL	trufflesecurity/trufflehog@main is a mutable ref — supply-chain risk.
.github/workflows/trufflehog.yml	28	SUGGESTION	--only-verified silently drops unverified findings.
README.md	1	SUGGESTION	Internal work-state progress marker leaked into user-facing README.

Other Observations (not in diff)

• __pycache__ files committed to the repo (4 new .pyc files under src/helios_bench/__pycache__/ and tests/__pycache__/). These are build artifacts and should be gitignored, not committed. Add __pycache__/ and *.pyc to .gitignore and remove the tracked files.
• Existing .gitignore is minimal and does not cover Python artifacts at all, which is why they were committed in the first place. Worth fixing in this PR.
• No journeys/ directory exists in the repository — the phenotype-journey install + for file in journeys/*.toml loop will silently iterate nothing in the current tree. Either add the journey files or remove the gate.
• SonarCloud quality gate is currently failing on this PR (3 Security Hotspots per the bot comment), independent of the diff here — the workflow changes do not address it.

Files Reviewed (7 files)

• .github/workflows/journey-gate.yml - 3 issues
• .github/workflows/trufflehog.yml - 2 issues
• README.md - 1 issue
• src/helios_bench/__pycache__/__init__.cpython-313.pyc - 0 issues (binary, artifact)
• src/helios_bench/__pycache__/tasks.cpython-313.pyc - 0 issues (binary, artifact)
• tests/__pycache__/test_benchmark.cpython-313-pytest-9.1.0.pyc - 0 issues (binary, artifact)
• tests/__pycache__/test_benchmark.cpython-314-pytest-9.1.0.pyc - 0 issues (binary, artifact)

Recommendation

Request changes. The most blocking issues:

1. Either add journey files or remove the journey-gate.yml workflow — a vacuous gate is worse than no gate.
2. Pin all third-party actions and git-installed crates to immutable refs (commit SHAs or release tags).
3. Stop committing __pycache__/ artifacts; update .gitignore.

Fix these issues in Kilo Cloud

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_{Reviewed by minimax-m3 · 155,681 tokens}