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file_fingerprint() put the input files' device number into the stat-mode cache identity. A shared filesystem (BeeGFS on the EMBL cluster) reports a different st_dev for the same file on each node, so a recursive run on one node treated every interfaces.csv certified on another as stale and recomputed it, although size, mtime, ctime and inode were identical. In a 1,900-fold AlphaPulldown campaign, 890 of 1,913 manifests differed only in st_dev (65 vs 59), and the summary report spent days rescoring valid tables. Size, mtime_ns, ctime_ns and inode stay in the fingerprint, so edits and replaced files are still detected (the replaced-inputs test is unchanged). Manifests written by 1.4.4 are recomputed once, as after any software change, because the software identity hashes the package source. The new regression test scores a run, then reports another st_dev for every file and checks that the table is reused; it fails on main. Full suite: 183 passed, 6 skipped. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
PAE plot fingerprints use the same file_fingerprint(), so a recursive run on another node also redrew every plot it found: the AlphaPulldown campaign's summary report redrew ~10,000 plots before the device number was dropped. The regression test now draws plots on the first run and fails if the second run, with another st_dev, reloads a model to redraw one; it fails on main. The CHANGELOG entry mentions plots. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Stat-mode cache validation included
st_devin each file fingerprint. On a shared filesystem the same file can have a differentst_devon each node (BeeGFS on the EMBL cluster: 65 on one node, 59 on another). Soalphajudge --recursiveon one node recomputed every table certified on another, and redrew every PAE plot, although size, mtime, ctime and inode matched.Seen in a 1,900-fold AlphaPulldown run:
st_dev;Change
file_fingerprint()no longer recordsdevice. It covers both inputs and PAE plots. Size, mtime_ns, ctime_ns and inode remain, so edits and replaced files are still detected.st_devfor every file, and check that neither the table nor any plot is redone. It fails onmain.Manifests written by 1.4.4 are recomputed once after upgrading, as after any software change.
Tests: full suite 183 passed, 6 skipped. After the plot test was added,
test_run_integrity.pypasses in full (59).🤖 Generated with Claude Code