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test: skip AlphaPulldown's own subfolders when the GPU checks look for folds - #667

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DimaMolod merged 1 commit into
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fix/cluster-check-fold-folders
Oct 14, 2026
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DimaMolod merged 1 commit into
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fix/cluster-check-fold-folders

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Found by the full AF2 GPU suite on main (228c5eed): TestRunModes::test__long_name failed with 0 != 5 ranked models.

  • Cause. With the alphapulldown/ and debug/ subfolders from feat: keep AlphaPulldown's own files in alphapulldown/ and debug/ #664, a fold written straight into the output directory has subfolders that are not folds. run_structure_prediction.py does that, as the long-name check uses it. The AF2 check (and the same pattern in two AlphaLink checks) took every subfolder for a fold.
  • Fix. Those checks skip AlphaPulldown's own subfolders. The AF3 checks already pick fold folders by their ranking_scores.csv.
  • Scope. Test-only; the prediction outputs are correct. AlphaJudge is unaffected: it recognises a run directory by its ranking files, which neither subfolder has.

Validation: the failed test reruns on the same setup, and the 2.11.0 release check runs the full AF2 suite with this fix.

🤖 Generated with Claude Code

…r folds

With the alphapulldown/ and debug/ subfolders (#664), a fold written straight
into the output directory (run_structure_prediction.py, as the AF2 long-name
check does) has subfolders that are not folds. The AF2 and AlphaLink checks
took every subfolder for a fold, so TestRunModes::test__long_name found no
ranked models in alphapulldown/ and failed on main 228c5ee. The AF3 checks
already pick fold folders by their ranking_scores.csv.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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@DimaMolod
DimaMolod merged commit 6e4b403 into main Oct 14, 2026
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@DimaMolod
DimaMolod deleted the fix/cluster-check-fold-folders branch October 14, 2026 15:28
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