This repository contains the code used for the analyses of the paper Acute BAF perturbation causes immediate changes in chromatin accessibility by Schick et al.
ATAC- and ChIP-seq data processing was performed as implemented in ngs_toolkit (https://ngs-toolkit.readthedocs.io/en/latest/ and https://github.com/afrendeiro/toolkit).
Pro-Seq data processing was performed as described in Jaeger et al. 2020 (https://github.com/GWinterLab/Jaeger_Mediator_NatureGenetics_2020).