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Jointly modeling prevalence, sensitivity and specificity for optimal sample allocation

This repository contains code and information related to the manuscript Jointly modeling prevalence, sensitivity and specificity for optimal sample allocation by Daniel B. Larremore, Bailey K. Fosdick, Sam Zhang, and Yonatan H. Grad. Using this code, one can replicate all plots and analyses from the paper.

Requirements

  • numpy
  • scipy
  • pystan
  • rpy2
  • matplotlib

Installation and Use

Clone or download the repository and launch Figures.ipynb in a Jupyter notebook.

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