Fixes to documentation + Claude.md

CLAUDE.md

@@ -1,11 +1,11 @@
-# PaleoBeasts — Claude Code Notes
+# ClimateCritters — Claude Code Notes
 
 ## Python environment
 
-Always use the `pb_jpl_env` conda/virtual environment when running Python commands for this project.
+Always use the `cc_env` conda/virtual environment when running Python commands for this project.
 
 ```bash
-conda run -n pb_jpl_env python ...
+conda run -n cc_env python ...
 # or activate first:
-conda activate pb_jpl_env
+conda activate cc_env
 ```

climatecritters/model_critters/bistable_melcher.py

@@ -176,7 +176,7 @@ class BistableMelcherModel(CCModel):
 
     References
     ----------
-    Melcher et al. (2025), Clim. Past, 21, 115-132. https://cp.copernicus.org/articles/21/115/2025/
+    Melcher et al. (2025), *Clim. Past*, 21, 115-132. https://cp.copernicus.org/articles/21/115/2025/
     """
 
     uses_post_history = True

climatecritters/model_critters/ebm.py

@@ -222,6 +222,19 @@ class EBM0D(EBMBase):
     OLR_func : Default OLR callable factory.
     albedo_func : Ice-albedo callable for use as the ``albedo`` parameter.
 
+    References
+    ----------
+    Budyko, M. I., 1969: The effect of solar radiation variations on the climate
+    of the Earth. *Tellus*, 21(5), 611–619,
+    [doi:10.3402/tellusa.v21i5.10109](https://doi.org/10.3402/tellusa.v21i5.10109).
+
+    Sellers, W. D., 1969: A global climatic model based on the energy balance of
+    the Earth-atmosphere system. *J. Appl. Meteorol.*, 8(3), 392–400,
+    [doi:10.1175/1520-0450(1969)008<0392:AGCMBO>2.0.CO;2](https://doi.org/10.1175/1520-0450(1969)008<0392:AGCMBO>2.0.CO;2).
+
+    R.T. Pierrehumbert, 2010: Principles of Planetary Climate. *Cambridge University Press*, 
+    ISBN 9781139495066. (Chapter 3)
+
     Examples
     --------
 
@@ -373,6 +386,16 @@ class EBM1DLat(EBMBase):
     EBMBase : Shared base class.
     albedo_func1D : Latitudinally-resolved albedo callable.
 
+    References
+    ----------
+    Budyko, M. I., 1969: The effect of solar radiation variations on the climate
+    of the Earth. *Tellus*, 21(5), 611–619,
+    [doi:10.3402/tellusa.v21i5.10109](https://doi.org/10.3402/tellusa.v21i5.10109).
+
+    Sellers, W. D., 1969: A global climatic model based on the energy balance of
+    the Earth-atmosphere system. *J. Appl. Meteorol.*, 8(3), 392–400,
+    [doi:10.1175/1520-0450(1969)008<0392:AGCMBO>2.0.CO;2](https://doi.org/10.1175/1520-0450(1969)008<0392:AGCMBO>2.0.CO;2).
+
     Examples
     --------
 

climatecritters/model_critters/enso_recharge.py

@@ -102,8 +102,8 @@ class ENSORechargeOscillator(CCModel):
 
     References
     ----------
-    Jin, F.-F. (1997). An equatorial ocean recharge paradigm for ENSO.
-    J. Atmos. Sci., 54, 811–829.
+    Jin, F.-F., 1997: An Equatorial Ocean Recharge Paradigm for ENSO. *J. Atmos.
+    Sci.*, 54, 811–829, [doi:10.1175/1520-0469(1997)054<0811:AEORPF>2.0.CO;2](https://doi.org/10.1175/1520-0469(1997)054<0811:AEORPF>2.0.CO;2).
 
     Examples
     --------

climatecritters/model_critters/g24.py

@@ -57,8 +57,8 @@ class Model3(CCModel):
 
     References
     ----------
-    Ganopolski, A. (2024). Glacial cycles. *Nature Reviews Earth &
-    Environment*, 5, 89–106.
+    Ganopolski, A., 2024: Toward generalized Milankovitch theory, *Clim. Past*, 20(1):151–185, [doi: 10.5194/cp-20-151-2024](https://cp.copernicus.org/articles/20/151/2024/.)
+
 
     Examples
     --------

climatecritters/model_critters/lorenz.py

@@ -55,8 +55,12 @@ class Lorenz96(CCModel):
 
     References
     ----------
-    Lorenz, E. N. (1996). Predictability: A problem partly solved.
-    Lorenz, E. N., & Emanuel, K. A. (1998). J. Atmos. Sci., 55, 399–414.
+    Lorenz, E. N., 1996: Predictability: A problem partly solved. *Proc. Seminar
+    on Predictability*, Reading, UK, ECMWF, 1–18.
+
+    Lorenz, E. N., and K. A. Emanuel, 1998: Optimal Sites for Supplementary
+    Weather Observations: Simulation with a Small Model. *J. Atmos. Sci.*, 55,
+    399–414, [doi:10.1175/1520-0469(1998)055<0399:OSFSWO>2.0.CO;2](https://doi.org/10.1175/1520-0469(1998)055<0399:OSFSWO>2.0.CO;2).
 
     Examples
     --------
@@ -208,7 +212,8 @@ class Lorenz63(CCModel):
 
     References
     ----------
-    Lorenz, E. N. (1963). J. Atmos. Sci., 20, 130–141.
+    Lorenz, E. N., 1963: Deterministic Nonperiodic Flow. *J. Atmos. Sci.*, 20,
+    130–141, [doi:10.1175/1520-0469(1963)020<0130:DNF>2.0.CO;2](https://doi.org/10.1175/1520-0469(1963)020<0130:DNF>2.0.CO;2).
 
     Examples
     --------

climatecritters/model_critters/roessler.py

@@ -33,7 +33,8 @@ class Roessler(CCModel):
 
     References
     ----------
-    Rössler, O. E. (1976). Phys. Lett. A, 57(5), 397–398.
+    Rössler, O. E., 1976: An equation for continuous chaos. *Phys. Lett. A*,
+    57(5), 397–398, [doi:10.1016/0375-9601(76)90101-8](https://doi.org/10.1016/0375-9601(76)90101-8).
 
     Examples
     --------

climatecritters/model_critters/stocker2003_bipolar_seesaw.py

@@ -43,8 +43,9 @@ class Stocker2003BipolarSeesaw(CCModel):
 
     References
     ----------
-    Stocker, T. F., & Johnsen, S. J. (2003). A minimum thermodynamic model
-    for the bipolar seesaw. Paleoceanography, 18(4), 1087.
+    Stocker, T. F., and S. J. Johnsen, 2003: A minimum thermodynamic model for
+    the bipolar seesaw. *Paleoceanography*, 18(4), 1087,
+    [doi:10.1029/2003PA000920](https://doi.org/10.1029/2003PA000920).
 
     Examples
     --------

climatecritters/model_critters/stommel.py

@@ -48,7 +48,7 @@ class Stommel(CCModel):
     References
     ----------
     Stommel, H. (1961). Thermohaline convection with two stable regimes of
-    flow. Tellus, 13(2), 224–230.
+    flow. *Tellus*, 13(2), 224–230.
 
     Notes
     -----

docs/index.qmd

@@ -35,6 +35,8 @@ ts = output.to_pyleo(var_names='x')
 ts.plot()
 ```
 
+![Lorenz63 x-component time series](figures/Lorenz63_timeseries.png)
+
 ## Where to go next
 
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