GitHub - MMARINeDNA/spatial_qm: A model to estimate concentrations of environmental DNA for many species, given qPCR and metabarcoding observations, and to simultaneously estimate a latent spatial field for those concentrations.

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
data		data
format_data_metabar_only.R		format_data_metabar_only.R
quant_metabar_only.stan		quant_metabar_only.stan
quant_metabar_qpcr_v22.rds		quant_metabar_qpcr_v22.rds
quant_metabar_qpcr_v22.stan		quant_metabar_qpcr_v22.stan
quant_metabar_qpcr_v27.stan		quant_metabar_qpcr_v27.stan
run_qpcr_metabar_workflow_v22.R		run_qpcr_metabar_workflow_v22.R
run_qpcr_metabar_workflow_v27.R		run_qpcr_metabar_workflow_v27.R
sim_example_v22_full.R		sim_example_v22_full.R
sim_example_v22_mwe.R		sim_example_v22_mwe.R
sim_example_v27_full.R		sim_example_v27_full.R
sim_example_v27_mwe.R		sim_example_v27_mwe.R
vignette_v22.Rmd		vignette_v22.Rmd

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A model to estimate concentrations of environmental DNA for many species, given qPCR and metabarcoding observations, and to simultaneously estimate a latent spatial field for those concentrations.