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TwoSampleMR 0.6.30

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@remlapmot remlapmot released this 06 Feb 13:54
· 47 commits to master since this release
v0.6.30
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Some optimizations to the code, including:

  • Vectorised mr_egger_regression_bootstrap()
  • Vectorised weighted_median_bootstrap()
  • Deleted duplicated weighted_median() function
  • Replace plyr function calls with data.table function calls
    • plyr::rbind.fill(...) to data.table::rbindlist(..., fill = TRUE, use.names = TRUE)
    • plyr::ddply(dat, cols, func) to lapply() over unique combinations + data.table::rbindlist()
    • Added data.table::setDF() calls to convert back to data.frame for compatibility
    • And removed plyr from Imports list
  • In flip_alleles() use chartr() instead of 4 gsub() calls
  • In random_string() use single call to sample() instead of n calls
  • Optimized mr_mode()
  • Replaced apply(..., any(is.na())) with complete.case()
  • Optimized the mr() function
  • Optimized the Optimize get_r_from_lor() function
  • Optimized the mr_rucker_bootstrap() and mr_rucker_jackknife_internal() functions
  • Replaced sapply() with vapply() in several cases
  • Optimized the simple_cap() function
  • And a few other minor optimizations
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