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fixed hard coded pathes #6

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fixed hard coded pathes #6

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3d0948f
fixed hard coded pathes
alnf Aug 19, 2016
c2f8e4f
Merge pull request #7 from NGSchool2016/master
Aug 24, 2016
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44 changes: 22 additions & 22 deletions data_integration/data/target_GSE17951.txt
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Original file line number Diff line number Diff line change
@@ -1,23 +1,23 @@
Name FileName Target
GSE17951_1 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449150.CEL Tumour
GSE17951_2 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449151.CEL Tumour
GSE17951_3 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449160.CEL Tumour
GSE17951_4 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449176.CEL Tumour
GSE17951_5 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449189.CEL Tumour
GSE17951_6 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449198.CEL Tumour
GSE17951_7 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449227.CEL Tumour
GSE17951_8 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449229.CEL Tumour
GSE17951_9 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449230.CEL Tumour
GSE17951_10 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449249.CEL Normal
GSE17951_11 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449250.CEL Normal
GSE17951_12 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449255.CEL Normal
GSE17951_13 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449257.CEL Normal
GSE17951_14 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449258.CEL Normal
GSE17951_15 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449259.CEL Normal
GSE17951_16 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449267.CEL Normal
GSE17951_17 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449269.CEL Normal
GSE17951_18 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449270.CEL Normal
GSE17951_19 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449286.CEL Normal
GSE17951_20 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449289.CEL Normal
GSE17951_21 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449292.CEL Normal
GSE17951_22 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE17951/GSM449293.CEL Normal
GSE17951_1 GSE17951/GSM449150.CEL Tumour
GSE17951_2 GSE17951/GSM449151.CEL Tumour
GSE17951_3 GSE17951/GSM449160.CEL Tumour
GSE17951_4 GSE17951/GSM449176.CEL Tumour
GSE17951_5 GSE17951/GSM449189.CEL Tumour
GSE17951_6 GSE17951/GSM449198.CEL Tumour
GSE17951_7 GSE17951/GSM449227.CEL Tumour
GSE17951_8 GSE17951/GSM449229.CEL Tumour
GSE17951_9 GSE17951/GSM449230.CEL Tumour
GSE17951_10 GSE17951/GSM449249.CEL Normal
GSE17951_11 GSE17951/GSM449250.CEL Normal
GSE17951_12 GSE17951/GSM449255.CEL Normal
GSE17951_13 GSE17951/GSM449257.CEL Normal
GSE17951_14 GSE17951/GSM449258.CEL Normal
GSE17951_15 GSE17951/GSM449259.CEL Normal
GSE17951_16 GSE17951/GSM449267.CEL Normal
GSE17951_17 GSE17951/GSM449269.CEL Normal
GSE17951_18 GSE17951/GSM449270.CEL Normal
GSE17951_19 GSE17951/GSM449286.CEL Normal
GSE17951_20 GSE17951/GSM449289.CEL Normal
GSE17951_21 GSE17951/GSM449292.CEL Normal
GSE17951_22 GSE17951/GSM449293.CEL Normal
24 changes: 12 additions & 12 deletions data_integration/data/target_GSE3325.txt
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
Name FileName Target
GSE3325_1 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74875.CEL Normal
GSE3325_2 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74876.CEL Normal
GSE3325_3 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74877.CEL Normal
GSE3325_4 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74879.CEL Normal
GSE3325_5 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74880.CEL Normal
GSE3325_6 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74881.CEL Tumour
GSE3325_7 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74882.CEL Tumour
GSE3325_8 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74883.CEL Tumour
GSE3325_9 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74884.CEL Tumour
GSE3325_10 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74885.CEL Tumour
GSE3325_11 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74886.CEL Tumour
GSE3325_12 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE3325/GSM74887.CEL Tumour
GSE3325_1 GSE3325/GSM74875.CEL Normal
GSE3325_2 GSE3325/GSM74876.CEL Normal
GSE3325_3 GSE3325/GSM74877.CEL Normal
GSE3325_4 GSE3325/GSM74879.CEL Normal
GSE3325_5 GSE3325/GSM74880.CEL Normal
GSE3325_6 GSE3325/GSM74881.CEL Tumour
GSE3325_7 GSE3325/GSM74882.CEL Tumour
GSE3325_8 GSE3325/GSM74883.CEL Tumour
GSE3325_9 GSE3325/GSM74884.CEL Tumour
GSE3325_10 GSE3325/GSM74885.CEL Tumour
GSE3325_11 GSE3325/GSM74886.CEL Tumour
GSE3325_12 GSE3325/GSM74887.CEL Tumour
2 changes: 1 addition & 1 deletion data_integration/data/target_GSE55945.txt
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
Name FileName TargetGSE55945_1 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348933_011508_HGU133_PLUS_2.0_MS_36D6.CEL TumourGSE55945_2 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348934_110607_HGU133_PLUS_2.0_MS_36C1.CEL TumourGSE55945_3 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348935_011508_HGU133_PLUS_2.0_MS_36D7.CEL TumourGSE55945_4 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348939_092707_HGU133_PLUS_2.0_NUGEN_TEST07.CEL TumourGSE55945_5 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348940_110607_HGU133_PLUS_2.0_MS_36C8.CEL TumourGSE55945_6 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348941_110807_HGU133_PLUS_2.0_MS_36A1.CEL TumourGSE55945_7 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348942_110607_HGU133_PLUS_2.0_MS_36C2.CEL TumourGSE55945_8 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348944_011508_HGU133_PLUS_2.0_MS_36C9.CEL TumourGSE55945_9 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348945_092707_HGU133_PLUS_2.0_NUGEN_TEST05.CEL TumourGSE55945_10 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348946_110607_HGU133_PLUS_2.0_MS_36C6.CEL NormalGSE55945_11 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348947_110607_HGU133_PLUS_2.0_MS_36C7.CEL NormalGSE55945_12 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348949_011508_HGU133_PLUS_2.0_MS_36D3.CEL NormalGSE55945_13 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348950_011508_HGU133_PLUS_2.0_MS_36D4.CEL NormalGSE55945_14 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348951_011508_HGU133_PLUS_2.0_MS_36D5.CEL NormalGSE55945_15 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348952_110807_HGU133_PLUS_2.0_MS_36A4.CEL NormalGSE55945_16 /Users/marzec01/Desktop/others/workshops/Lechu_Slowacja_bix_workshop_08_2016/workshop/data/CEL_files/GSE55945/GSM1348953_110807_HGU133_PLUS_2.0_MS_36A5.CEL Normal
Name FileName TargetGSE55945_1 GSE55945/GSM1348933_011508_HGU133_PLUS_2.0_MS_36D6.CEL TumourGSE55945_2 GSE55945/GSM1348934_110607_HGU133_PLUS_2.0_MS_36C1.CEL TumourGSE55945_3 GSE55945/GSM1348935_011508_HGU133_PLUS_2.0_MS_36D7.CEL TumourGSE55945_4 GSE55945/GSM1348939_092707_HGU133_PLUS_2.0_NUGEN_TEST07.CEL TumourGSE55945_5 GSE55945/GSM1348940_110607_HGU133_PLUS_2.0_MS_36C8.CEL TumourGSE55945_6 GSE55945/GSM1348941_110807_HGU133_PLUS_2.0_MS_36A1.CEL TumourGSE55945_7 GSE55945/GSM1348942_110607_HGU133_PLUS_2.0_MS_36C2.CEL TumourGSE55945_8 GSE55945/GSM1348944_011508_HGU133_PLUS_2.0_MS_36C9.CEL TumourGSE55945_9 GSE55945/GSM1348945_092707_HGU133_PLUS_2.0_NUGEN_TEST05.CEL TumourGSE55945_10 GSE55945/GSM1348946_110607_HGU133_PLUS_2.0_MS_36C6.CEL NormalGSE55945_11 GSE55945/GSM1348947_110607_HGU133_PLUS_2.0_MS_36C7.CEL NormalGSE55945_12 GSE55945/GSM1348949_011508_HGU133_PLUS_2.0_MS_36D3.CEL NormalGSE55945_13 GSE55945/GSM1348950_011508_HGU133_PLUS_2.0_MS_36D4.CEL NormalGSE55945_14 GSE55945/GSM1348951_011508_HGU133_PLUS_2.0_MS_36D5.CEL NormalGSE55945_15 GSE55945/GSM1348952_110807_HGU133_PLUS_2.0_MS_36A4.CEL NormalGSE55945_16 GSE55945/GSM1348953_110807_HGU133_PLUS_2.0_MS_36A5.CEL Normal
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